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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-TGATGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 9.5e-002
 0.001060 0.000593 0.000593 0.997755
 0.001060 0.010076 0.978321 0.010543
 0.951864 0.000593 0.046484 0.001060
 0.001060 0.010076 0.000593 0.988271
 0.023968 0.000593 0.974379 0.001060
 0.197959 0.604855 0.023502 0.173685
 0.928807 0.069540 0.000593 0.001060
 0.974772 0.000593 0.023575 0.001060

MOTIF 2-AAATGACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 3.0e-001
 0.817480 0.073567 0.024915 0.084038
 0.730703 0.024915 0.059544 0.184838
 0.851860 0.024915 0.073528 0.049697
 0.025410 0.049280 0.000629 0.924681
 0.049697 0.024915 0.817063 0.108325
 0.851820 0.000629 0.049202 0.098349
 0.108364 0.812379 0.049202 0.030055
 0.025410 0.073567 0.670558 0.230464

MOTIF 3-CAAACCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003804 0.908030 0.084363 0.003804
 0.991940 0.002128 0.002128 0.003804
 0.991940 0.002128 0.002128 0.003804
 0.991940 0.002128 0.002128 0.003804
 0.086038 0.908030 0.002128 0.003804
 0.086038 0.825796 0.002128 0.086038
 0.827471 0.084363 0.002128 0.086038
 0.168802 0.743032 0.002128 0.086038

MOTIF 4-ACAAAATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.0e-001
 0.990358 0.002546 0.002546 0.004550
 0.004550 0.988354 0.002546 0.004550
 0.793609 0.002546 0.100920 0.102924
 0.793609 0.100920 0.100920 0.004550
 0.990358 0.002546 0.002546 0.004550
 0.793451 0.100920 0.002546 0.103083
 0.004550 0.002546 0.002546 0.990358
 0.004550 0.002546 0.988354 0.004550

MOTIF 5-ACTGATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.929967 0.001198 0.047541 0.021294
 0.094828 0.631679 0.085379 0.188115
 0.002140 0.001198 0.001198 0.995465
 0.048409 0.140453 0.808997 0.002140
 0.995465 0.001198 0.001198 0.002140
 0.002140 0.001198 0.001198 0.995465
 0.940346 0.047467 0.001198 0.010990
 0.902777 0.001198 0.093885 0.002140

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ztf-7.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ztf-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.27 seconds
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