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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-CAATTATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.025727 0.928818 0.019727 0.025727
 0.934818 0.019727 0.019727 0.025727
 0.934818 0.019727 0.019727 0.025727
 0.025727 0.019727 0.019727 0.934818
 0.025727 0.019727 0.019727 0.934818
 0.934818 0.019727 0.019727 0.025727
 0.025727 0.019727 0.019727 0.934818
 0.025727 0.928818 0.019727 0.025727

MOTIF 2-AACAACTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.851456 0.002211 0.072830 0.073503
 0.851229 0.143677 0.002211 0.002883
 0.002883 0.992023 0.002211 0.002883
 0.992695 0.002211 0.002211 0.002883
 0.922075 0.072830 0.002211 0.002883
 0.002883 0.992023 0.002211 0.002883
 0.215425 0.072830 0.072830 0.638914
 0.002883 0.072830 0.143677 0.780609

MOTIF 3-ATGTGTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.992522 0.002263 0.002263 0.002952
 0.075244 0.074556 0.002263 0.847936
 0.075244 0.002263 0.919541 0.002952
 0.075244 0.002263 0.002263 0.920229
 0.002952 0.002263 0.847016 0.147770
 0.075244 0.002263 0.147081 0.775411
 0.920229 0.002263 0.002263 0.075244
 0.847936 0.074556 0.002263 0.075244

MOTIF 4-AAGAAACM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.958873 0.002488 0.002488 0.036150
 0.753064 0.081974 0.002488 0.162473
 0.003245 0.081974 0.911535 0.003245
 0.991778 0.002488 0.002488 0.003245
 0.912292 0.002488 0.002488 0.082731
 0.912292 0.002488 0.002488 0.082731
 0.003245 0.991021 0.002488 0.003245
 0.322730 0.512564 0.081974 0.082731

MOTIF 5-MTTGCAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.300425 0.593987 0.101567 0.004021
 0.004021 0.003083 0.101567 0.891329
 0.102505 0.101567 0.003083 0.792845
 0.004021 0.101567 0.890391 0.004021
 0.004021 0.988875 0.003083 0.004021
 0.891329 0.101567 0.003083 0.004021
 0.989813 0.003083 0.003083 0.004021
 0.989813 0.003083 0.003083 0.004021

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ztf-26.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ztf-26/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.22 seconds
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