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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-ACTGATAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 2.1e-001
 0.873538 0.000795 0.098122 0.027546
 0.086056 0.781888 0.051388 0.080668
 0.027546 0.000795 0.027228 0.944431
 0.038488 0.027228 0.880304 0.053979
 0.917955 0.000795 0.027228 0.054022
 0.001112 0.005851 0.053662 0.939375
 0.880536 0.027228 0.011737 0.080498
 0.891522 0.053662 0.000795 0.054022

MOTIF 2-CAAAAACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.228203 0.599001 0.057877 0.114919
 0.994258 0.001689 0.001689 0.002364
 0.938070 0.001689 0.057877 0.002364
 0.994258 0.001689 0.001689 0.002364
 0.938070 0.057877 0.001689 0.002364
 0.994258 0.001689 0.001689 0.002364
 0.058551 0.700650 0.057877 0.182922
 0.114919 0.057877 0.824840 0.002364

MOTIF 3-CGACGATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.003462 0.990601 0.002474 0.003462
 0.003462 0.084774 0.908301 0.003462
 0.662125 0.167339 0.084774 0.085762
 0.085762 0.826002 0.002474 0.085762
 0.003462 0.002474 0.990601 0.003462
 0.909289 0.084774 0.002474 0.003462
 0.168327 0.002474 0.002474 0.826725
 0.003462 0.002474 0.908301 0.085762

MOTIF 4-AAAACTAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.879550 0.003286 0.112567 0.004597
 0.988831 0.003286 0.003286 0.004597
 0.988831 0.003286 0.003286 0.004597
 0.770269 0.112567 0.112567 0.004597
 0.004597 0.987520 0.003286 0.004597
 0.004597 0.003286 0.112567 0.879550
 0.988831 0.003286 0.003286 0.004597
 0.004597 0.659324 0.112567 0.223511

MOTIF 5-CTCCGCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.026509 0.928036 0.018945 0.026509
 0.026509 0.018945 0.018945 0.935600
 0.026509 0.928036 0.018945 0.026509
 0.026509 0.928036 0.018945 0.026509
 0.026509 0.018945 0.928036 0.026509
 0.026509 0.928036 0.018945 0.026509
 0.026509 0.928036 0.018945 0.026509
 0.026509 0.018945 0.018945 0.935600

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ztf-22.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ztf-22/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.94 seconds
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