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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.257 C 0.243 G 0.243 T 0.257 

MOTIF 1-CGAGAGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.002236 0.993416 0.002112 0.002236
 0.087463 0.002112 0.787638 0.122787
 0.812131 0.002112 0.002112 0.183645
 0.002236 0.002112 0.993416 0.002236
 0.752244 0.002112 0.183132 0.062511
 0.268483 0.002112 0.727169 0.002236
 0.002236 0.002112 0.993416 0.002236
 0.933264 0.062388 0.002112 0.002236

MOTIF 2-TTGCAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.001195 0.065551 0.001129 0.932125
 0.130040 0.001129 0.001129 0.867703
 0.097932 0.033340 0.864575 0.004153
 0.033406 0.886514 0.014463 0.065617
 0.817105 0.033340 0.116149 0.033406
 0.771069 0.001129 0.065551 0.162251
 0.681141 0.130077 0.155376 0.033406
 0.922932 0.001129 0.033340 0.042599

MOTIF 3-GTCCGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.023373 0.022082 0.931173 0.023373
 0.023373 0.022082 0.022082 0.932464
 0.023373 0.931173 0.022082 0.023373
 0.023373 0.931173 0.022082 0.023373
 0.023373 0.022082 0.931173 0.023373
 0.023373 0.931173 0.022082 0.023373
 0.932464 0.022082 0.022082 0.023373
 0.932464 0.022082 0.022082 0.023373

MOTIF 4-GCGCTAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.127340 0.004303 0.863803 0.004554
 0.127340 0.863803 0.004303 0.004554
 0.004554 0.004303 0.986589 0.004554
 0.127340 0.741017 0.004303 0.127340
 0.004554 0.004303 0.004303 0.986840
 0.741269 0.127089 0.004303 0.127340
 0.986840 0.004303 0.004303 0.004554
 0.864054 0.004303 0.004303 0.127340

MOTIF 5-CGAACCTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002890 0.835636 0.158583 0.002890
 0.002890 0.002731 0.991488 0.002890
 0.991648 0.002731 0.002731 0.002890
 0.991648 0.002731 0.002731 0.002890
 0.002890 0.913562 0.002731 0.080817
 0.002890 0.757459 0.236760 0.002890
 0.002890 0.289651 0.080657 0.626802
 0.236669 0.002731 0.757710 0.002890

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ztf-16.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ztf-16/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	1.10 seconds
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