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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-CCTTCGCS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.006981 0.979084 0.006953 0.006981
 0.006981 0.785911 0.200127 0.006981
 0.006981 0.006953 0.006953 0.979112
 0.006981 0.006953 0.200127 0.785939
 0.006981 0.979084 0.006953 0.006981
 0.200155 0.006953 0.785911 0.006981
 0.006981 0.979084 0.006953 0.006981
 0.006981 0.399563 0.586474 0.006981

MOTIF 2-TATCCACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.143038 0.143018 0.004969 0.708975
 0.847024 0.004969 0.004969 0.143038
 0.143038 0.004969 0.004969 0.847024
 0.004989 0.985053 0.004969 0.004989
 0.143038 0.708955 0.143018 0.004989
 0.985073 0.004969 0.004969 0.004989
 0.143038 0.708955 0.143018 0.004989
 0.985073 0.004969 0.004969 0.004989

MOTIF 3-CGAGACGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 4 P= 1.0e+000
 0.022773 0.931773 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.931773 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773

MOTIF 4-CACAGTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 2 P= 1.0e+000
 0.022773 0.931773 0.022682 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.931773 0.022682 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.022682 0.931864
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.931773 0.022773

MOTIF 5-CAGTGCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 2 P= 1.0e+000
 0.022773 0.931773 0.022682 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.022682 0.931864
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.931773 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.931773 0.022682 0.022773

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ztf-11.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ztf-11/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	0.30 seconds
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