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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-TTKCGMAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 120 P= 1.7e-001
 0.000629 0.000400 0.000400 0.998570
 0.000629 0.000400 0.000400 0.998570
 0.049198 0.000400 0.450802 0.499600
 0.007765 0.991205 0.000400 0.000629
 0.000629 0.000400 0.991205 0.007765
 0.499600 0.450802 0.000400 0.049198
 0.998570 0.000400 0.000400 0.000629
 0.998570 0.000400 0.000400 0.000629

MOTIF 2-GCAGACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.001851 0.043135 0.953163 0.001851
 0.043810 0.785327 0.043135 0.127728
 0.701947 0.085095 0.085230 0.127728
 0.114383 0.043135 0.840631 0.001851
 0.659988 0.169013 0.043135 0.127863
 0.001851 0.911204 0.001176 0.085769
 0.911879 0.001176 0.043135 0.043810
 0.085904 0.827151 0.043135 0.043810

MOTIF 3-ACATTTTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.991025 0.002512 0.002512 0.003952
 0.003952 0.989585 0.002512 0.003952
 0.811819 0.092114 0.092114 0.003952
 0.003952 0.182005 0.002512 0.811531
 0.003952 0.002512 0.002512 0.991025
 0.003952 0.092114 0.002512 0.901422
 0.003952 0.002512 0.092114 0.901422
 0.183445 0.002512 0.810091 0.003952

MOTIF 4-GCTTATTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.003872 0.178346 0.777563 0.040219
 0.091673 0.901993 0.002461 0.003872
 0.091673 0.090262 0.002461 0.815603
 0.003872 0.002461 0.038808 0.954859
 0.954859 0.002461 0.002461 0.040219
 0.179474 0.090262 0.002461 0.727802
 0.091673 0.002461 0.002461 0.903404
 0.091673 0.090262 0.090262 0.727802

MOTIF 5-CAAAAATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.027791 0.926755 0.017664 0.027791
 0.936882 0.017664 0.017664 0.027791
 0.936882 0.017664 0.017664 0.027791
 0.936882 0.017664 0.017664 0.027791
 0.936882 0.017664 0.017664 0.027791
 0.936882 0.017664 0.017664 0.027791
 0.027791 0.017664 0.017664 0.936882
 0.027791 0.926755 0.017664 0.027791

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/zip-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_zip-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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