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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.319 C 0.181 G 0.181 T 0.319 

MOTIF 1-TTWCGWAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 1.2e-001
 0.004329 0.000796 0.016069 0.978807
 0.031953 0.022391 0.007118 0.938537
 0.290861 0.031342 0.173340 0.504457
 0.001408 0.930785 0.031391 0.036417
 0.036417 0.031391 0.930785 0.001408
 0.504457 0.173340 0.031342 0.290861
 0.938537 0.007118 0.022391 0.031953
 0.978807 0.016069 0.000796 0.004329

MOTIF 2-CAGGTTAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.003077 0.992106 0.001740 0.003077
 0.698481 0.296702 0.001740 0.003077
 0.003077 0.001740 0.992106 0.003077
 0.003077 0.135292 0.791778 0.069853
 0.136629 0.001740 0.068516 0.793115
 0.097496 0.001740 0.135292 0.765472
 0.765472 0.135292 0.001740 0.097496
 0.003077 0.724787 0.269059 0.003077

MOTIF 3-GCCGCSTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.002241 0.215973 0.730902 0.050884
 0.050884 0.799681 0.147194 0.002241
 0.002241 0.945607 0.001267 0.050884
 0.050884 0.001267 0.751038 0.196811
 0.245453 0.751038 0.001267 0.002241
 0.002241 0.653754 0.341764 0.002241
 0.099526 0.049910 0.021404 0.829161
 0.050884 0.001267 0.293121 0.654728

MOTIF 4-ACATTGTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 8.8e-001
 0.944422 0.051928 0.001319 0.002332
 0.029601 0.661455 0.051928 0.257017
 0.944422 0.001319 0.001319 0.052941
 0.002332 0.051928 0.001319 0.944422
 0.103550 0.001319 0.001319 0.893812
 0.052941 0.001319 0.943408 0.002332
 0.052941 0.001319 0.051928 0.893812
 0.154649 0.001319 0.841700 0.002332

MOTIF 5-CTGAAGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.005036 0.877800 0.002847 0.114317
 0.005036 0.002847 0.002847 0.989270
 0.005036 0.002847 0.877800 0.114317
 0.989270 0.002847 0.002847 0.005036
 0.989270 0.002847 0.002847 0.005036
 0.114317 0.221761 0.658886 0.005036
 0.223950 0.658886 0.002847 0.114317
 0.005036 0.002847 0.002847 0.989270

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/zip-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_zip-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	0.99 seconds
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