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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.252 C 0.248 G 0.248 T 0.252 

MOTIF 1-CAGGCAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.003436 0.989735 0.003392 0.003436
 0.989779 0.003392 0.003392 0.003436
 0.098100 0.098056 0.800407 0.003436
 0.098100 0.098056 0.800407 0.003436
 0.193384 0.799788 0.003392 0.003436
 0.856032 0.042476 0.098056 0.003436
 0.989779 0.003392 0.003392 0.003436
 0.098100 0.800407 0.098056 0.003436

MOTIF 2-ACGAGACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 7.6e-001
 0.949008 0.001649 0.047673 0.001671
 0.140648 0.763684 0.001649 0.094018
 0.094018 0.066674 0.837637 0.001671
 0.837960 0.047673 0.112697 0.001671
 0.020672 0.001649 0.791313 0.186366
 0.810335 0.093997 0.093997 0.001671
 0.094018 0.810314 0.093997 0.001671
 0.810030 0.001649 0.186650 0.001671

MOTIF 3-ARCGGAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.982446 0.005826 0.005826 0.005901
 0.332125 0.005826 0.656147 0.005901
 0.005901 0.982371 0.005826 0.005901
 0.005901 0.005826 0.982371 0.005901
 0.168482 0.005826 0.819791 0.005901
 0.982446 0.005826 0.005826 0.005901
 0.168482 0.005826 0.819791 0.005901
 0.005901 0.005826 0.819791 0.168482

MOTIF 4-GCCAGCAM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005901 0.005826 0.982371 0.005901
 0.005901 0.982371 0.005826 0.005901
 0.005901 0.982371 0.005826 0.005901
 0.819866 0.005826 0.005826 0.168482
 0.005901 0.168406 0.819791 0.005901
 0.168482 0.819791 0.005826 0.005901
 0.982446 0.005826 0.005826 0.005901
 0.332125 0.656147 0.005826 0.005901

MOTIF 5-AATAGTGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.769641 0.113196 0.113196 0.003967
 0.878921 0.003916 0.003916 0.113247
 0.003967 0.003916 0.003916 0.988201
 0.988201 0.003916 0.003916 0.003967
 0.113247 0.003916 0.878871 0.003967
 0.003967 0.003916 0.003916 0.988201
 0.113247 0.222476 0.551031 0.113247
 0.113247 0.113196 0.003916 0.769641

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/zag-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_zag-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	0.72 seconds
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