********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-CTACAGTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.5e-002
 0.067366 0.927975 0.001874 0.002785
 0.002785 0.028608 0.001874 0.966733
 0.993468 0.001874 0.001874 0.002785
 0.002785 0.992557 0.001874 0.002785
 0.580745 0.167899 0.209406 0.041951
 0.002785 0.001874 0.992557 0.002785
 0.002785 0.001874 0.001874 0.993468
 0.993468 0.001874 0.001874 0.002785

MOTIF 2-GCGAGACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.7e-001
 0.089498 0.088881 0.568313 0.253307
 0.001886 0.907347 0.001269 0.089498
 0.089498 0.001269 0.907347 0.001886
 0.907964 0.001269 0.088881 0.001886
 0.001886 0.001269 0.994959 0.001886
 0.951840 0.045005 0.001269 0.001886
 0.001886 0.994959 0.001269 0.001886
 0.001886 0.994959 0.001269 0.001886

MOTIF 3-GYBCCTTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 5.0e-001
 0.060975 0.048898 0.889263 0.000863
 0.000863 0.647778 0.000581 0.350778
 0.149551 0.181760 0.330870 0.337819
 0.000863 0.997693 0.000581 0.000863
 0.000863 0.949343 0.048931 0.000863
 0.220806 0.040613 0.060628 0.677953
 0.000863 0.088995 0.000581 0.909561
 0.000863 0.060628 0.000581 0.937928

MOTIF 4-GTAGATCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.027173 0.018282 0.927373 0.027173
 0.027173 0.018282 0.018282 0.936264
 0.936264 0.018282 0.018282 0.027173
 0.027173 0.018282 0.927373 0.027173
 0.936264 0.018282 0.018282 0.027173
 0.027173 0.018282 0.018282 0.936264
 0.027173 0.927373 0.018282 0.027173
 0.936264 0.018282 0.018282 0.027173

MOTIF 5-AAATTATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.0e+000
 0.966791 0.000875 0.000875 0.031459
 0.893894 0.031033 0.000875 0.074198
 0.893894 0.103931 0.000875 0.001300
 0.001300 0.073773 0.000875 0.924052
 0.001300 0.000875 0.031033 0.966791
 0.638876 0.091641 0.268182 0.001300
 0.001300 0.031033 0.051599 0.916067
 0.091775 0.031033 0.122092 0.755100

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/xnd-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_xnd-1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n01.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.00 seconds
********************************************************************************