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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-AGAAATAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 3.0e-001
 0.744199 0.249872 0.002506 0.003423
 0.003423 0.002506 0.908457 0.085614
 0.744729 0.167151 0.084696 0.003423
 0.991566 0.002506 0.002506 0.003423
 0.827184 0.084696 0.084696 0.003423
 0.003423 0.002506 0.002506 0.991566
 0.991566 0.002506 0.002506 0.003423
 0.991566 0.002506 0.002506 0.003423

MOTIF 2-CAATTTCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.002057 0.945006 0.001505 0.051432
 0.896182 0.001505 0.001505 0.100808
 0.776832 0.050881 0.071321 0.100967
 0.022496 0.001505 0.100415 0.875583
 0.051432 0.050881 0.100415 0.797272
 0.051432 0.100256 0.001505 0.846806
 0.071872 0.883687 0.021945 0.022496
 0.002057 0.001505 0.745905 0.250533

MOTIF 3-AAGACAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.895663 0.097511 0.002885 0.003941
 0.895663 0.097511 0.002885 0.003941
 0.003941 0.002885 0.799676 0.193498
 0.951117 0.002885 0.002885 0.043113
 0.003941 0.799676 0.002885 0.193498
 0.990290 0.002885 0.002885 0.003941
 0.003941 0.002885 0.989233 0.003941
 0.801037 0.002885 0.097511 0.098568

MOTIF 4-ATWAATTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.966154 0.000936 0.031632 0.001279
 0.001279 0.000936 0.216801 0.780985
 0.414818 0.000936 0.000936 0.583310
 0.996850 0.000936 0.000936 0.001279
 0.984143 0.000936 0.013643 0.001279
 0.291140 0.000936 0.000936 0.706989
 0.001279 0.000936 0.000936 0.996850
 0.274156 0.000936 0.723630 0.001279

MOTIF 5-AAGTGATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.901145 0.002733 0.002733 0.093389
 0.901145 0.002733 0.002733 0.093389
 0.183332 0.182331 0.630604 0.003734
 0.003734 0.002733 0.002733 0.990800
 0.003734 0.002733 0.989799 0.003734
 0.990800 0.002733 0.002733 0.003734
 0.003734 0.092388 0.002733 0.901145
 0.721548 0.092388 0.002733 0.183332

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/vab-15.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_vab-15/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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