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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-AAWTATTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 9.5e-002
 0.997389 0.000743 0.000743 0.001126
 0.540692 0.000743 0.218773 0.239793
 0.368720 0.208050 0.000743 0.422488
 0.001126 0.000743 0.000743 0.997389
 0.997389 0.000743 0.000743 0.001126
 0.001126 0.000743 0.264810 0.733322
 0.001126 0.000743 0.208050 0.790082
 0.001126 0.711990 0.285758 0.001126

MOTIF 2-CTTTTCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.003727 0.845886 0.146660 0.003727
 0.039218 0.002458 0.002458 0.955866
 0.089462 0.002458 0.002458 0.905622
 0.003727 0.088193 0.002458 0.905622
 0.003727 0.088193 0.002458 0.905622
 0.003727 0.990089 0.002458 0.003727
 0.612373 0.174204 0.174204 0.039218
 0.003727 0.002458 0.990089 0.003727

MOTIF 3-CAACAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 8.8e-001
 0.027391 0.927155 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391
 0.027391 0.927155 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391
 0.936482 0.018064 0.018064 0.027391

MOTIF 4-WCTTGCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.368171 0.001051 0.001051 0.629728
 0.111531 0.808089 0.078788 0.001593
 0.001593 0.221044 0.184398 0.592964
 0.001593 0.001051 0.184516 0.812840
 0.184941 0.001051 0.812416 0.001593
 0.001593 0.995764 0.001051 0.001593
 0.074885 0.037697 0.001051 0.886368
 0.001593 0.665714 0.001051 0.331643

MOTIF 5-AAGAATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.936244 0.001660 0.001660 0.060435
 0.761932 0.059578 0.001660 0.176830
 0.002518 0.001660 0.895891 0.099932
 0.878327 0.001660 0.059578 0.060435
 0.994162 0.001660 0.001660 0.002518
 0.002518 0.117681 0.001660 0.878141
 0.970186 0.001660 0.001660 0.026493
 0.703828 0.175973 0.117681 0.002518

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-86.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-86/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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