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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-ARGAAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.982958 0.005353 0.005353 0.006335
 0.656685 0.005353 0.331626 0.006335
 0.006335 0.005353 0.981976 0.006335
 0.820919 0.005353 0.005353 0.168374
 0.982958 0.005353 0.005353 0.006335
 0.820919 0.005353 0.167392 0.006335
 0.982958 0.005353 0.005353 0.006335
 0.982958 0.005353 0.005353 0.006335

MOTIF 2-CGCGACGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.024636 0.929909 0.020818 0.024636
 0.024636 0.020818 0.929909 0.024636
 0.024636 0.929909 0.020818 0.024636
 0.024636 0.020818 0.929909 0.024636
 0.933727 0.020818 0.020818 0.024636
 0.024636 0.929909 0.020818 0.024636
 0.024636 0.020818 0.929909 0.024636
 0.024636 0.929909 0.020818 0.024636

MOTIF 3-GCGCCAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.134645 0.068213 0.728529 0.068613
 0.134645 0.728529 0.068213 0.068613
 0.002582 0.200276 0.794560 0.002582
 0.002582 0.662497 0.134245 0.200676
 0.002582 0.926624 0.068213 0.002582
 0.927024 0.068213 0.002182 0.002582
 0.794961 0.002182 0.200276 0.002582
 0.068613 0.794560 0.002182 0.134645

MOTIF 4-ATCWATCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.931716 0.002041 0.063827 0.002416
 0.002416 0.125613 0.063827 0.808144
 0.188610 0.745147 0.002041 0.064202
 0.498377 0.188236 0.002041 0.311345
 0.993502 0.002041 0.002041 0.002416
 0.125988 0.002041 0.002041 0.869930
 0.064202 0.931341 0.002041 0.002416
 0.745521 0.002041 0.002041 0.250396

MOTIF 5-GKGACACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.168744 0.005365 0.819541 0.006349
 0.168744 0.005365 0.330156 0.495735
 0.006349 0.005365 0.819541 0.168744
 0.982920 0.005365 0.005365 0.006349
 0.006349 0.981936 0.005365 0.006349
 0.982920 0.005365 0.005365 0.006349
 0.006349 0.981936 0.005365 0.006349
 0.982920 0.005365 0.005365 0.006349

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-62.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-62/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n07.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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