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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.32 C 0.18 G 0.18 T 0.32 

MOTIF 1-GGATTABA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.001832 0.001027 0.995310 0.001832
 0.001832 0.040650 0.876440 0.081078
 0.820836 0.017429 0.040650 0.121085
 0.001832 0.001027 0.001027 0.996115
 0.041455 0.001027 0.057053 0.900466
 0.916869 0.001027 0.040650 0.041455
 0.046261 0.393978 0.359302 0.200459
 0.618411 0.040650 0.119896 0.221043

MOTIF 2-GCAACAAK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.004145 0.002324 0.989386 0.004145
 0.004145 0.899705 0.092004 0.004145
 0.991207 0.002324 0.002324 0.004145
 0.991207 0.002324 0.002324 0.004145
 0.004145 0.810025 0.002324 0.183506
 0.811846 0.092004 0.002324 0.093826
 0.901527 0.002324 0.002324 0.093826
 0.183795 0.002324 0.271654 0.542228

MOTIF 3-AAACTGRR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 1.0e+000
 0.944925 0.000461 0.018238 0.036376
 0.809725 0.160456 0.011220 0.018599
 0.916389 0.018238 0.039415 0.025958
 0.098045 0.601871 0.149599 0.150485
 0.018599 0.036015 0.190752 0.754634
 0.036376 0.044961 0.882287 0.036376
 0.449565 0.036015 0.513598 0.000822
 0.523346 0.053964 0.343400 0.079290

MOTIF 4-ATTCATCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.938218 0.016327 0.016327 0.029127
 0.029127 0.016327 0.016327 0.938218
 0.029127 0.016327 0.016327 0.938218
 0.029127 0.925418 0.016327 0.029127
 0.938218 0.016327 0.016327 0.029127
 0.029127 0.016327 0.016327 0.938218
 0.029127 0.925418 0.016327 0.029127
 0.938218 0.016327 0.016327 0.029127

MOTIF 5-GACGAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.029127 0.016327 0.925418 0.029127
 0.938218 0.016327 0.016327 0.029127
 0.029127 0.925418 0.016327 0.029127
 0.029127 0.016327 0.925418 0.029127
 0.938218 0.016327 0.016327 0.029127
 0.938218 0.016327 0.016327 0.029127
 0.938218 0.016327 0.016327 0.029127
 0.938218 0.016327 0.016327 0.029127

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-55.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-55/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n06.farnam.hpc.yale.internal
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FINALTIME:	1.17 seconds
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