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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.293 C 0.207 G 0.207 T 0.293 

MOTIF 1-CTTCTCTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.1e-001
 0.002245 0.993925 0.001585 0.002245
 0.055337 0.107939 0.023563 0.813161
 0.024223 0.001585 0.054677 0.919515
 0.024223 0.929652 0.011740 0.034385
 0.108599 0.054677 0.001585 0.835139
 0.002245 0.802062 0.107939 0.087754
 0.108599 0.161374 0.001585 0.728442
 0.024223 0.001585 0.001585 0.972607

MOTIF 2-AATWGAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 3.6e-001
 0.996630 0.000986 0.000986 0.001397
 0.996630 0.000986 0.000986 0.001397
 0.100848 0.034030 0.000986 0.864135
 0.516480 0.006424 0.000986 0.476110
 0.056975 0.034030 0.893918 0.015076
 0.996630 0.000986 0.000986 0.001397
 0.963586 0.000986 0.034030 0.001397
 0.015076 0.000986 0.000986 0.982951

MOTIF 3-AATTTGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.923704 0.051831 0.001502 0.022963
 0.944538 0.051831 0.001502 0.002128
 0.002128 0.001502 0.001502 0.994867
 0.022963 0.102322 0.102322 0.772394
 0.153601 0.001502 0.143063 0.701833
 0.002128 0.001502 0.994241 0.002128
 0.994867 0.001502 0.001502 0.002128
 0.002128 0.001502 0.001502 0.994867

MOTIF 4-TCCTCCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.004623 0.112583 0.003263 0.879531
 0.004623 0.987492 0.003263 0.004623
 0.004623 0.987492 0.003263 0.004623
 0.004623 0.003263 0.003263 0.988851
 0.004623 0.987492 0.003263 0.004623
 0.113942 0.878172 0.003263 0.004623
 0.770212 0.112583 0.112583 0.004623
 0.113942 0.112583 0.549861 0.223614

MOTIF 5-GGCDACGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.005188 0.003662 0.985962 0.005188
 0.005188 0.003662 0.863273 0.127877
 0.005188 0.863273 0.003662 0.127877
 0.250960 0.003662 0.494812 0.250566
 0.987488 0.003662 0.003662 0.005188
 0.005188 0.985962 0.003662 0.005188
 0.127877 0.003662 0.617501 0.250960
 0.987488 0.003662 0.003662 0.005188

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-42.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-42/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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