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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.253 C 0.247 G 0.247 T 0.253 

MOTIF 1-AGACGCAS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.985061 0.004941 0.004941 0.005057
 0.005057 0.004941 0.846344 0.143658
 0.846460 0.004941 0.004941 0.143658
 0.005057 0.984945 0.004941 0.005057
 0.005057 0.004941 0.984945 0.005057
 0.005057 0.984945 0.004941 0.005057
 0.985061 0.004941 0.004941 0.005057
 0.005057 0.420745 0.569141 0.005057

MOTIF 2-CCTCCTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.137184 0.720915 0.004718 0.137184
 0.004829 0.853269 0.004718 0.137184
 0.059253 0.137073 0.004718 0.798956
 0.004829 0.985624 0.004718 0.004829
 0.004829 0.985624 0.004718 0.004829
 0.004829 0.004718 0.004718 0.985734
 0.004829 0.853269 0.004718 0.137184
 0.004829 0.853269 0.137073 0.004829

MOTIF 3-TGTTGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 5.0e-001
 0.022991 0.022464 0.022464 0.932082
 0.022991 0.022464 0.931555 0.022991
 0.022991 0.022464 0.022464 0.932082
 0.022991 0.022464 0.022464 0.932082
 0.022991 0.022464 0.931555 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.932082 0.022464 0.022464 0.022991

MOTIF 4-TAGAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 7.7e-001
 0.022991 0.022464 0.022464 0.932082
 0.932082 0.022464 0.022464 0.022991
 0.022991 0.022464 0.931555 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.022991 0.022464 0.931555 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.932082 0.022464 0.022464 0.022991

MOTIF 5-CGTKMACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.022991 0.931555 0.022464 0.022991
 0.022991 0.022464 0.931555 0.022991
 0.022991 0.022464 0.022464 0.932082
 0.022991 0.022464 0.477009 0.477536
 0.477536 0.477009 0.022464 0.022991
 0.932082 0.022464 0.022464 0.022991
 0.022991 0.931555 0.022464 0.022991
 0.022991 0.022464 0.931555 0.022991

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-39.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-39/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	0.86 seconds
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