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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-GCCAGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.026427 0.019027 0.928118 0.026427
 0.026427 0.928118 0.019027 0.026427
 0.026427 0.928118 0.019027 0.026427
 0.935518 0.019027 0.019027 0.026427
 0.026427 0.019027 0.928118 0.026427
 0.026427 0.928118 0.019027 0.026427
 0.935518 0.019027 0.019027 0.026427
 0.935518 0.019027 0.019027 0.026427

MOTIF 2-AGCGAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.983381 0.004904 0.004904 0.006811
 0.169219 0.004904 0.819065 0.006811
 0.006811 0.819065 0.004904 0.169219
 0.006811 0.004904 0.981473 0.006811
 0.820973 0.004904 0.167312 0.006811
 0.983381 0.004904 0.004904 0.006811
 0.983381 0.004904 0.004904 0.006811
 0.820973 0.004904 0.004904 0.169219

MOTIF 3-ATGASAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.987516 0.003684 0.003684 0.005116
 0.005116 0.003684 0.003684 0.987516
 0.005116 0.003684 0.986083 0.005116
 0.987516 0.003684 0.003684 0.005116
 0.127115 0.493269 0.374500 0.005116
 0.865518 0.003684 0.125682 0.005116
 0.743520 0.003684 0.125682 0.127115
 0.865518 0.003684 0.125682 0.005116

MOTIF 4-AACRACGM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.741864 0.003708 0.126493 0.127935
 0.987435 0.003708 0.003708 0.005150
 0.005150 0.985993 0.003708 0.005150
 0.496292 0.003708 0.372065 0.127935
 0.741864 0.126493 0.003708 0.127935
 0.005150 0.985993 0.003708 0.005150
 0.005150 0.003708 0.985993 0.005150
 0.373507 0.617636 0.003708 0.005150

MOTIF 5-TAGAGACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 4 P= 1.0e+000
 0.026427 0.019027 0.019027 0.935518
 0.935518 0.019027 0.019027 0.026427
 0.026427 0.019027 0.928118 0.026427
 0.935518 0.019027 0.019027 0.026427
 0.026427 0.019027 0.928118 0.026427
 0.935518 0.019027 0.019027 0.026427
 0.026427 0.928118 0.019027 0.026427
 0.026427 0.019027 0.928118 0.026427

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-30.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-30/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.50 seconds
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