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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.295 C 0.205 G 0.205 T 0.295 

MOTIF 1-STACGGTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 5.5e-002
 0.095355 0.291235 0.546221 0.067189
 0.001002 0.024226 0.024226 0.950545
 0.997608 0.000695 0.000695 0.001002
 0.001002 0.997300 0.000695 0.001002
 0.048838 0.000695 0.665796 0.284672
 0.024534 0.024226 0.950237 0.001002
 0.001002 0.024226 0.000695 0.974076
 0.870134 0.094896 0.033967 0.001002

MOTIF 2-AAAGGCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.5e-002
 0.935936 0.018609 0.018609 0.026845
 0.935936 0.018609 0.018609 0.026845
 0.935936 0.018609 0.018609 0.026845
 0.026845 0.018609 0.927700 0.026845
 0.026845 0.018609 0.927700 0.026845
 0.026845 0.927700 0.018609 0.026845
 0.026845 0.018609 0.927700 0.026845
 0.026845 0.927700 0.018609 0.026845

MOTIF 3-AAAATTGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 7.6e-001
 0.742663 0.135001 0.076024 0.046312
 0.906644 0.045732 0.045732 0.001892
 0.951064 0.045732 0.001312 0.001892
 0.951064 0.001312 0.045732 0.001892
 0.001892 0.005391 0.030925 0.961792
 0.046312 0.090295 0.001312 0.862081
 0.076604 0.001312 0.920191 0.001892
 0.144636 0.001312 0.001312 0.852741

MOTIF 4-GCGAGACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 8.8e-001
 0.108522 0.020250 0.738522 0.132706
 0.001518 0.709718 0.001052 0.287712
 0.108408 0.001052 0.889022 0.001518
 0.746853 0.001052 0.250577 0.001518
 0.108522 0.001052 0.888907 0.001518
 0.925118 0.001052 0.001052 0.072778
 0.001518 0.909902 0.036682 0.051898
 0.001518 0.995912 0.001052 0.001518

MOTIF 5-AAACACCR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.914238 0.002299 0.080147 0.003317
 0.914238 0.002299 0.002299 0.081164
 0.914238 0.002299 0.002299 0.081164
 0.003317 0.991068 0.002299 0.003317
 0.992085 0.002299 0.002299 0.003317
 0.134252 0.782285 0.080147 0.003317
 0.003317 0.913220 0.002299 0.081164
 0.601338 0.080147 0.315199 0.003317

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/unc-130.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_unc-130/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	0.99 seconds
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