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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-CCCCGCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.002943 0.991595 0.002519 0.002943
 0.002943 0.686735 0.002519 0.307803
 0.154636 0.839902 0.002519 0.002943
 0.078668 0.915870 0.002519 0.002943
 0.002943 0.002519 0.991595 0.002943
 0.002943 0.991595 0.002519 0.002943
 0.002943 0.991595 0.002519 0.002943
 0.002943 0.915870 0.078244 0.002943

MOTIF 2-GTTGCAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.087366 0.086989 0.686500 0.139145
 0.001663 0.044206 0.087127 0.867004
 0.001663 0.044206 0.001423 0.952708
 0.044446 0.086989 0.824120 0.044446
 0.001663 0.824120 0.172555 0.001663
 0.909925 0.001423 0.044206 0.044446
 0.824359 0.086989 0.001423 0.087228
 0.130425 0.044206 0.823706 0.001663

MOTIF 3-ATTGCGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.851283 0.072986 0.002350 0.073381
 0.002745 0.002350 0.002350 0.992555
 0.073381 0.002350 0.002350 0.921919
 0.002745 0.072986 0.850888 0.073381
 0.002745 0.992159 0.002350 0.002745
 0.073381 0.002350 0.921524 0.002745
 0.215335 0.143848 0.072986 0.567831
 0.851283 0.002350 0.072986 0.073381

MOTIF 4-CGAACCCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.110848 0.885237 0.001806 0.002110
 0.056391 0.001806 0.939693 0.002110
 0.994279 0.001806 0.001806 0.002110
 0.994279 0.001806 0.001806 0.002110
 0.002110 0.993975 0.001806 0.002110
 0.002110 0.720808 0.274972 0.002110
 0.165480 0.830605 0.001806 0.002110
 0.002110 0.219985 0.775796 0.002110

MOTIF 5-ATAATTGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.918528 0.002452 0.002452 0.076568
 0.002865 0.076155 0.032963 0.888017
 0.918528 0.002452 0.002452 0.076568
 0.992231 0.002452 0.002452 0.002865
 0.150509 0.002452 0.002452 0.844587
 0.002865 0.076155 0.002452 0.918528
 0.076568 0.002452 0.770471 0.150509
 0.150509 0.076155 0.770471 0.002865

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ttx-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ttx-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.21 seconds
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