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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.331 C 0.169 G 0.169 T 0.331 

MOTIF 1-CTKATMAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 2.7e-001
 0.080383 0.628472 0.193385 0.097759
 0.000735 0.051886 0.003563 0.943816
 0.009368 0.000376 0.499265 0.490990
 0.998513 0.000376 0.000376 0.000735
 0.000735 0.000376 0.000376 0.998513
 0.490990 0.499265 0.000376 0.009368
 0.943816 0.003563 0.051886 0.000735
 0.097759 0.193385 0.628472 0.080383

MOTIF 2-CTTTTCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.069222 0.794083 0.067580 0.069116
 0.069116 0.001611 0.001611 0.927662
 0.003147 0.001611 0.001611 0.993630
 0.003147 0.067580 0.067580 0.861693
 0.003147 0.067580 0.001611 0.927662
 0.069116 0.860157 0.001611 0.069116
 0.003147 0.926126 0.001611 0.069116
 0.003147 0.859945 0.001611 0.135296

MOTIF 3-AATTTCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.768908 0.001821 0.076372 0.152899
 0.918250 0.001821 0.076372 0.003557
 0.034419 0.001821 0.001821 0.961940
 0.003557 0.001821 0.001821 0.992801
 0.003557 0.076372 0.032683 0.887388
 0.003557 0.991065 0.001821 0.003557
 0.003557 0.032683 0.001821 0.961940
 0.693513 0.076372 0.001821 0.228294

MOTIF 4-CTATCACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.003214 0.991927 0.001645 0.003214
 0.003214 0.001645 0.001645 0.993496
 0.993496 0.001645 0.001645 0.003214
 0.003214 0.001645 0.069006 0.926135
 0.138151 0.789630 0.001645 0.070574
 0.858558 0.001645 0.001645 0.138151
 0.070574 0.721834 0.001645 0.205946
 0.116510 0.001645 0.069006 0.812839

MOTIF 5-AATCTTTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.836696 0.001900 0.001900 0.159505
 0.914718 0.001900 0.001900 0.081482
 0.003710 0.001900 0.001900 0.992490
 0.003710 0.756611 0.235968 0.003710
 0.018586 0.079672 0.040786 0.860957
 0.081482 0.001900 0.001900 0.914718
 0.081482 0.001900 0.001900 0.914718
 0.992490 0.001900 0.001900 0.003710

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tlp-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tlp-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.95 seconds
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