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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.29 C 0.21 G 0.21 T 0.29 

MOTIF 1-AACAGTCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.706502 0.002164 0.073708 0.217626
 0.849588 0.073708 0.073708 0.002996
 0.146083 0.704984 0.002164 0.146769
 0.820123 0.031630 0.073708 0.074540
 0.002996 0.031630 0.962377 0.002996
 0.218312 0.002164 0.073708 0.705816
 0.175548 0.819291 0.002164 0.002996
 0.002996 0.002164 0.920300 0.074540

MOTIF 2-ACACAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.931879 0.001869 0.063663 0.002588
 0.064382 0.869367 0.063663 0.002588
 0.746497 0.063663 0.125457 0.064382
 0.002588 0.869367 0.001869 0.126176
 0.931879 0.001869 0.001869 0.064382
 0.870085 0.001869 0.001869 0.126176
 0.807699 0.001869 0.187844 0.002588
 0.808291 0.063663 0.001869 0.126176

MOTIF 3-AAATCART STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.913502 0.080838 0.002374 0.003286
 0.898707 0.002374 0.080838 0.018081
 0.678110 0.080838 0.237766 0.003286
 0.035602 0.237766 0.002374 0.724258
 0.081750 0.834126 0.080838 0.003286
 0.913502 0.002374 0.002374 0.081750
 0.331937 0.002374 0.662403 0.003286
 0.003286 0.237766 0.002374 0.756574

MOTIF 4-ACGATGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.891534 0.002977 0.101369 0.004121
 0.201848 0.692663 0.002977 0.102513
 0.200905 0.002977 0.791998 0.004121
 0.793142 0.002977 0.199760 0.004121
 0.004121 0.101369 0.002977 0.891534
 0.004121 0.002977 0.988782 0.004121
 0.891534 0.002977 0.002977 0.102513
 0.102513 0.002977 0.890390 0.004121

MOTIF 5-AMGAGATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.980097 0.005881 0.005881 0.008141
 0.396923 0.589054 0.005881 0.008141
 0.008141 0.005881 0.977836 0.008141
 0.785706 0.005881 0.005881 0.202532
 0.008141 0.005881 0.783445 0.202532
 0.980097 0.005881 0.005881 0.008141
 0.008141 0.005881 0.005881 0.980097
 0.008141 0.200272 0.783445 0.008141

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tbx-9.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tbx-9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.11 seconds
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