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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-CTTCMCWC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 2.4e-001
 0.001058 0.909226 0.059454 0.030261
 0.059464 0.117860 0.001048 0.821628
 0.001058 0.059454 0.147629 0.791859
 0.030261 0.826643 0.100746 0.042350
 0.592181 0.405713 0.001048 0.001058
 0.059464 0.809529 0.129949 0.001058
 0.463562 0.013137 0.042340 0.480960
 0.042350 0.897137 0.001048 0.059464

MOTIF 2-CCGCACGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 2.4e-001
 0.001309 0.883387 0.077889 0.037415
 0.001309 0.851660 0.145723 0.001309
 0.109629 0.109616 0.779446 0.001309
 0.073522 0.887767 0.037403 0.001309
 0.583629 0.290499 0.001296 0.124576
 0.037415 0.671010 0.001296 0.290279
 0.001309 0.001296 0.996087 0.001309
 0.001309 0.001296 0.872703 0.124692

MOTIF 3-ATCGAACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.770092 0.124832 0.052529 0.052547
 0.001838 0.001820 0.052529 0.943813
 0.052547 0.740468 0.052529 0.154456
 0.006494 0.001820 0.939139 0.052547
 0.943813 0.001820 0.001820 0.052547
 0.943813 0.052529 0.001820 0.001838
 0.001838 0.943795 0.001820 0.052547
 0.001838 0.943795 0.052529 0.001838

MOTIF 4-CAGCCGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002980 0.908854 0.085186 0.002980
 0.826383 0.002952 0.002952 0.167713
 0.085215 0.002952 0.908854 0.002980
 0.002980 0.991088 0.002952 0.002980
 0.002980 0.826619 0.085186 0.085215
 0.002980 0.002952 0.991088 0.002980
 0.167713 0.826355 0.002952 0.002980
 0.743618 0.002952 0.002952 0.250478

MOTIF 5-ATAACCAM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.596382 0.200933 0.002368 0.200317
 0.002391 0.002368 0.002368 0.992873
 0.728971 0.200294 0.068344 0.002391
 0.926897 0.002368 0.068344 0.002391
 0.002391 0.992850 0.002368 0.002391
 0.068366 0.926874 0.002368 0.002391
 0.992873 0.002368 0.002368 0.002391
 0.332268 0.465046 0.134319 0.068366

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tbx-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tbx-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.08 seconds
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