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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-CTAGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 77 P= 1.4e-001
 0.000655 0.952921 0.000612 0.045812
 0.018249 0.000612 0.000612 0.980528
 0.729357 0.269376 0.000612 0.000655
 0.000655 0.000612 0.998078 0.000655
 0.000655 0.000612 0.920090 0.078643
 0.000655 0.962919 0.000612 0.035814
 0.000655 0.998078 0.000612 0.000655
 0.848433 0.000612 0.150300 0.000655

MOTIF 2-AGGAGTAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 2.4e-001
 0.991284 0.002838 0.002838 0.003040
 0.003040 0.002838 0.991082 0.003040
 0.003040 0.002838 0.991082 0.003040
 0.991284 0.002838 0.002838 0.003040
 0.003040 0.248093 0.745826 0.003040
 0.003040 0.002838 0.002838 0.991284
 0.991284 0.002838 0.002838 0.003040
 0.003040 0.991082 0.002838 0.003040

MOTIF 3-ADTTTCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.992966 0.002290 0.002290 0.002453
 0.333485 0.002290 0.265956 0.398269
 0.002453 0.002290 0.002290 0.992966
 0.002453 0.002290 0.002290 0.992966
 0.002453 0.002290 0.002290 0.992966
 0.002453 0.992803 0.002290 0.002453
 0.992966 0.002290 0.002290 0.002453
 0.663544 0.002290 0.331713 0.002453

MOTIF 4-TGGCCGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003663 0.003419 0.003419 0.989498
 0.101848 0.003419 0.891069 0.003663
 0.003663 0.003419 0.989254 0.003663
 0.003663 0.989254 0.003419 0.003663
 0.003663 0.891069 0.003419 0.101848
 0.003663 0.003419 0.989254 0.003663
 0.989498 0.003419 0.003419 0.003663
 0.596126 0.200106 0.003419 0.200349

MOTIF 5-TTCTCCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.003670 0.003426 0.003426 0.989479
 0.102028 0.101784 0.003426 0.792762
 0.003670 0.989235 0.003426 0.003670
 0.102028 0.200459 0.003426 0.694087
 0.003670 0.890877 0.101784 0.003670
 0.003670 0.989235 0.003426 0.003670
 0.989479 0.003426 0.003426 0.003670
 0.989479 0.003426 0.003426 0.003670

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tbx-7.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tbx-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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