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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-AAYTCAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.922290 0.002118 0.002118 0.073475
 0.922290 0.002118 0.072624 0.002968
 0.002968 0.566623 0.072624 0.357784
 0.002968 0.002118 0.002118 0.992796
 0.073475 0.850933 0.002118 0.073475
 0.992796 0.002118 0.002118 0.002968
 0.992796 0.002118 0.002118 0.002968
 0.002968 0.002118 0.143358 0.851556

MOTIF 2-AMTWAWCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.994505 0.001615 0.001615 0.002264
 0.562690 0.433431 0.001615 0.002264
 0.002264 0.001615 0.001615 0.994505
 0.649032 0.001615 0.001615 0.347737
 0.918460 0.001615 0.001615 0.078309
 0.562863 0.001615 0.001615 0.433906
 0.002264 0.993856 0.001615 0.002264
 0.616991 0.001615 0.271566 0.109827

MOTIF 3-GCAAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.106940 0.044790 0.846440 0.001831
 0.132423 0.777472 0.044790 0.045315
 0.821621 0.131758 0.044790 0.001831
 0.865105 0.001306 0.131758 0.001831
 0.107315 0.001306 0.846064 0.045315
 0.673028 0.001306 0.044790 0.280876
 0.995557 0.001306 0.001306 0.001831
 0.777997 0.001306 0.175382 0.045315

MOTIF 4-AAACCACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.992833 0.002107 0.002107 0.002953
 0.992833 0.002107 0.002107 0.002953
 0.922689 0.002107 0.072251 0.002953
 0.002953 0.851473 0.142622 0.002953
 0.002953 0.991987 0.002107 0.002953
 0.893651 0.031144 0.072251 0.002953
 0.073097 0.733719 0.120086 0.073097
 0.002953 0.142622 0.072251 0.782174

MOTIF 5-ACCCATCW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.909292 0.002472 0.002472 0.085764
 0.168329 0.825734 0.002472 0.003465
 0.003465 0.990599 0.002472 0.003465
 0.003465 0.743699 0.084772 0.168064
 0.991591 0.002472 0.002472 0.003465
 0.003465 0.002472 0.167336 0.826727
 0.085764 0.825999 0.002472 0.085764
 0.332928 0.084772 0.002472 0.579828

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tbx-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tbx-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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