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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-TTTCAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.2e-001
 0.001339 0.036907 0.006533 0.955221
 0.037012 0.001234 0.144617 0.817137
 0.072799 0.072694 0.036907 0.817599
 0.056453 0.890533 0.036907 0.016106
 0.989370 0.001234 0.008057 0.001339
 0.817714 0.036907 0.036907 0.108472
 0.873984 0.036907 0.001234 0.087875
 0.205527 0.001234 0.016001 0.777237

MOTIF 2-CACTAACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.2e-001
 0.002006 0.994138 0.001849 0.002006
 0.651464 0.322553 0.023976 0.002006
 0.002006 0.833786 0.055300 0.108908
 0.002006 0.001849 0.001849 0.994295
 0.887394 0.001849 0.108750 0.002006
 0.833771 0.055300 0.001849 0.109080
 0.002006 0.994138 0.001849 0.002006
 0.002006 0.994138 0.001849 0.002006

MOTIF 3-GGCKCAGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 7.0e-001
 0.181551 0.000778 0.816827 0.000844
 0.000844 0.000778 0.997534 0.000844
 0.068381 0.929997 0.000778 0.000844
 0.000844 0.000778 0.431685 0.566693
 0.000844 0.997534 0.000778 0.000844
 0.997600 0.000778 0.000778 0.000844
 0.090942 0.000778 0.907436 0.000844
 0.000844 0.000778 0.000778 0.997600

MOTIF 4-TCGGCCAY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 7.6e-001
 0.074545 0.001264 0.001264 0.922928
 0.062809 0.934556 0.001264 0.001371
 0.001371 0.001264 0.995994 0.001371
 0.074545 0.001264 0.922820 0.001371
 0.001371 0.995994 0.001264 0.001371
 0.037899 0.959466 0.001264 0.001371
 0.996101 0.001264 0.001264 0.001371
 0.037899 0.334188 0.001264 0.626649

MOTIF 5-AACTGGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.935774 0.002008 0.060040 0.002178
 0.935774 0.002008 0.060040 0.002178
 0.002178 0.993635 0.002008 0.002178
 0.235433 0.060040 0.002008 0.702519
 0.002178 0.002008 0.993635 0.002178
 0.002178 0.002008 0.993635 0.002178
 0.002178 0.002008 0.235263 0.760551
 0.993806 0.002008 0.002008 0.002178

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/tbp1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_tbp1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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