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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-ACGCAGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 3.0e-001
 0.871891 0.002158 0.062941 0.063010
 0.002226 0.993389 0.002158 0.002226
 0.063010 0.002158 0.932606 0.002226
 0.063010 0.871822 0.062941 0.002226
 0.871695 0.002158 0.123920 0.002226
 0.027389 0.002158 0.968227 0.002226
 0.298896 0.002158 0.696720 0.002226
 0.002226 0.932606 0.062941 0.002226

MOTIF 2-ACGACACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.809691 0.173560 0.015487 0.001262
 0.001262 0.720269 0.035680 0.242789
 0.001262 0.104703 0.685869 0.208166
 0.961835 0.001223 0.001223 0.035718
 0.139198 0.720436 0.001223 0.139143
 0.720530 0.208072 0.070136 0.001262
 0.070175 0.927340 0.001223 0.001262
 0.001262 0.104592 0.015487 0.878659

MOTIF 3-AGTGCTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.932173 0.022373 0.022373 0.023082
 0.023082 0.022373 0.931464 0.023082
 0.023082 0.022373 0.022373 0.932173
 0.023082 0.022373 0.931464 0.023082
 0.023082 0.931464 0.022373 0.023082
 0.023082 0.022373 0.022373 0.932173
 0.023082 0.931464 0.022373 0.023082
 0.932173 0.022373 0.022373 0.023082

MOTIF 4-TAGAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002655 0.235495 0.002573 0.759277
 0.774050 0.002573 0.220721 0.002655
 0.002655 0.075056 0.919634 0.002655
 0.992198 0.002573 0.002573 0.002655
 0.002655 0.002573 0.992116 0.002655
 0.992198 0.002573 0.002573 0.002655
 0.919716 0.002573 0.002573 0.075137
 0.774518 0.075056 0.147771 0.002655

MOTIF 5-GCGCTCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003976 0.003854 0.988194 0.003976
 0.003976 0.988194 0.003854 0.003976
 0.003976 0.003854 0.988194 0.003976
 0.003976 0.988194 0.003854 0.003976
 0.003976 0.003854 0.003854 0.988316
 0.003976 0.988194 0.003854 0.003976
 0.112523 0.879647 0.003854 0.003976
 0.771222 0.003854 0.003854 0.221070

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/swsn-7.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_swsn-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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