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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-CTGCTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 3.5e-001
 0.033276 0.630103 0.142800 0.193821
 0.161867 0.129323 0.065260 0.643549
 0.001219 0.065209 0.932354 0.001219
 0.001219 0.932354 0.001094 0.065333
 0.001219 0.110588 0.065260 0.822933
 0.065437 0.033151 0.868136 0.033276
 0.720423 0.007225 0.271133 0.001219
 0.033276 0.868188 0.065260 0.033276

MOTIF 2-GCAGAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.023955 0.021500 0.930591 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.021500 0.930591 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.021500 0.930591 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.933045 0.021500 0.021500 0.023955

MOTIF 3-ACGCAGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.023955 0.021500 0.930591 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.021500 0.930591 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955

MOTIF 4-GAGAGGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001612 0.001446 0.995330 0.001612
 0.740992 0.001446 0.128630 0.128931
 0.146481 0.001446 0.765672 0.086401
 0.995495 0.001446 0.001446 0.001612
 0.129238 0.001446 0.782778 0.086537
 0.001612 0.001446 0.995330 0.001612
 0.655931 0.086372 0.128766 0.128931
 0.825781 0.043841 0.086372 0.044006

MOTIF 5-ACACCGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.933045 0.021500 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.023955 0.021500 0.930591 0.023955
 0.023955 0.930591 0.021500 0.023955
 0.023955 0.930591 0.021500 0.023955

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sup-37.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sup-37/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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