******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.255 C 0.245 G 0.245 T 0.255 MOTIF 1-ATASCTCA STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.2e-001 0.940523 0.001897 0.055603 0.001977 0.001977 0.055603 0.001897 0.940523 0.918290 0.024129 0.001897 0.055684 0.055684 0.615590 0.326749 0.001977 0.001977 0.994149 0.001897 0.001977 0.001977 0.001897 0.109482 0.886644 0.109390 0.779151 0.001897 0.109563 0.725179 0.217241 0.001897 0.055684 MOTIF 2-GGGTTCGA STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001 0.002416 0.002317 0.992851 0.002416 0.002416 0.002317 0.992851 0.002416 0.002416 0.002317 0.992851 0.002416 0.002416 0.200122 0.002317 0.795145 0.002416 0.002317 0.133762 0.861505 0.002416 0.992851 0.002317 0.002416 0.199901 0.002317 0.795366 0.002416 0.992949 0.002317 0.002317 0.002416 MOTIF 3-ATGGGGAA STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000 0.992407 0.002496 0.002496 0.002602 0.002602 0.002496 0.002496 0.992407 0.002602 0.002496 0.850965 0.143938 0.214833 0.002496 0.780070 0.002602 0.002602 0.002496 0.992301 0.002602 0.002602 0.214727 0.780070 0.002602 0.638840 0.285395 0.002496 0.073270 0.709735 0.073164 0.143832 0.073270 MOTIF 4-GTCAATGA STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000 0.023200 0.022255 0.931345 0.023200 0.023200 0.022255 0.022255 0.932291 0.023200 0.931345 0.022255 0.023200 0.932291 0.022255 0.022255 0.023200 0.932291 0.022255 0.022255 0.023200 0.023200 0.022255 0.022255 0.932291 0.023200 0.022255 0.931345 0.023200 0.932291 0.022255 0.022255 0.023200 MOTIF 5-ATCKAGAA STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.0e+000 0.832453 0.010002 0.112166 0.045379 0.089938 0.143608 0.067787 0.698667 0.089974 0.718976 0.145707 0.045343 0.232831 0.010002 0.264347 0.492820 0.810227 0.143644 0.023048 0.023081 0.127309 0.023048 0.848823 0.000820 0.801012 0.197383 0.000786 0.000820 0.953085 0.000786 0.023048 0.023081 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sptf-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sptf-2/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 1.15 seconds ********************************************************************************