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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-CCCACTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.001919 0.895577 0.100585 0.001919
 0.051310 0.846345 0.051035 0.051310
 0.100701 0.698014 0.001644 0.199642
 0.945402 0.051035 0.001644 0.001919
 0.051310 0.945127 0.001644 0.001919
 0.001919 0.100426 0.100426 0.797229
 0.001919 0.149817 0.846345 0.001919
 0.677842 0.269204 0.051035 0.001919

MOTIF 2-ATCTGGTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.933573 0.020973 0.020973 0.024482
 0.024482 0.020973 0.020973 0.933573
 0.024482 0.930064 0.020973 0.024482
 0.024482 0.020973 0.020973 0.933573
 0.024482 0.020973 0.930064 0.024482
 0.024482 0.020973 0.930064 0.024482
 0.024482 0.020973 0.020973 0.933573
 0.933573 0.020973 0.020973 0.024482

MOTIF 3-ATCAAATK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.794479 0.001666 0.151870 0.051986
 0.001944 0.001666 0.001666 0.994725
 0.051986 0.743917 0.152112 0.051986
 0.694477 0.101748 0.201831 0.001944
 0.994725 0.001666 0.001666 0.001944
 0.853211 0.001666 0.022381 0.122742
 0.072701 0.001666 0.001666 0.923968
 0.001944 0.001666 0.643593 0.352798

MOTIF 4-CTCGAACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.049087 0.663695 0.190728 0.096490
 0.049087 0.001573 0.190728 0.758612
 0.143589 0.853003 0.001573 0.001836
 0.001836 0.048824 0.805600 0.143741
 0.758764 0.001573 0.096075 0.143589
 0.995019 0.001573 0.001573 0.001836
 0.049087 0.947505 0.001573 0.001836
 0.190992 0.805600 0.001573 0.001836

MOTIF 5-AATAAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.961756 0.002451 0.002451 0.033343
 0.623122 0.149954 0.002451 0.224473
 0.002861 0.002451 0.002451 0.992238
 0.918604 0.076084 0.002451 0.002861
 0.992238 0.002451 0.002451 0.002861
 0.918604 0.076084 0.002451 0.002861
 0.771338 0.076084 0.076084 0.076494
 0.002861 0.991828 0.002451 0.002861

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/spr-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_spr-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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