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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-RTCACATG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 2.5e-002
 0.530245 0.000815 0.331838 0.137102
 0.000958 0.062326 0.000815 0.935900
 0.000958 0.997268 0.000815 0.000958
 0.800624 0.049992 0.123837 0.025547
 0.099312 0.618104 0.232448 0.050135
 0.514318 0.111542 0.176395 0.197745
 0.000958 0.000815 0.000815 0.997411
 0.000958 0.000815 0.913245 0.084982

MOTIF 2-AGAGACGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.5e-002
 0.886630 0.001581 0.014425 0.097364
 0.049535 0.049257 0.899350 0.001858
 0.994980 0.001581 0.001581 0.001858
 0.097364 0.001581 0.851521 0.049535
 0.899628 0.049257 0.049257 0.001858
 0.193487 0.803074 0.001581 0.001858
 0.001858 0.001581 0.994702 0.001858
 0.001858 0.994702 0.001581 0.001858

MOTIF 3-CTTMHYTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.056946 0.884203 0.056715 0.002137
 0.002137 0.056627 0.001817 0.939420
 0.111756 0.001817 0.001817 0.884610
 0.550320 0.390917 0.056627 0.002137
 0.276184 0.276041 0.001817 0.445958
 0.002137 0.572690 0.001817 0.423357
 0.056946 0.001817 0.001817 0.939420
 0.002137 0.001817 0.001817 0.994229

MOTIF 4-AACAGGTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.992566 0.002341 0.002341 0.002752
 0.992566 0.002341 0.002341 0.002752
 0.002752 0.709513 0.002341 0.285394
 0.639094 0.285209 0.002341 0.073356
 0.002752 0.002341 0.992155 0.002752
 0.002752 0.072944 0.638910 0.285394
 0.002752 0.002341 0.214379 0.780529
 0.002752 0.002341 0.002341 0.992566

MOTIF 5-AGGAAATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.907828 0.002765 0.086157 0.003251
 0.003251 0.037286 0.956212 0.003251
 0.003251 0.086157 0.907342 0.003251
 0.991220 0.002765 0.002765 0.003251
 0.705715 0.037286 0.253747 0.003251
 0.991220 0.002765 0.002765 0.003251
 0.003251 0.002765 0.086157 0.907828
 0.003251 0.086157 0.823950 0.086643

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/snu-23.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_snu-23/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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