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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.29 C 0.21 G 0.21 T 0.29 

MOTIF 1-TCGTCAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.2e-001
 0.005124 0.003698 0.003698 0.987480
 0.005124 0.986054 0.003698 0.005124
 0.005124 0.003698 0.986054 0.005124
 0.005124 0.003698 0.125998 0.865180
 0.005124 0.986054 0.003698 0.005124
 0.987480 0.003698 0.003698 0.005124
 0.987480 0.003698 0.003698 0.005124
 0.742881 0.125998 0.003698 0.127423

MOTIF 2-ACATCATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.849376 0.001467 0.098625 0.050533
 0.099190 0.800309 0.049968 0.050533
 0.750562 0.001467 0.245939 0.002032
 0.002032 0.001467 0.195940 0.800562
 0.002032 0.974392 0.001467 0.022110
 0.946534 0.001467 0.001467 0.050533
 0.002032 0.001467 0.147439 0.849063
 0.050533 0.848810 0.001467 0.099190

MOTIF 3-ATGATACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.764882 0.057000 0.118253 0.059865
 0.118784 0.071659 0.059523 0.750033
 0.059865 0.000887 0.850066 0.089183
 0.779541 0.088841 0.101072 0.030546
 0.118689 0.000887 0.030205 0.850219
 0.821090 0.000887 0.059523 0.118501
 0.292613 0.641029 0.065130 0.001228
 0.030546 0.035812 0.890958 0.042683

MOTIF 4-CCACCCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004129 0.988763 0.002980 0.004129
 0.004129 0.890216 0.002980 0.102675
 0.792818 0.002980 0.101527 0.102675
 0.004129 0.791670 0.101527 0.102675
 0.004129 0.988763 0.002980 0.004129
 0.102675 0.890216 0.002980 0.004129
 0.891365 0.002980 0.101527 0.004129
 0.102675 0.890216 0.002980 0.004129

MOTIF 5-TAGAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004312 0.003112 0.003112 0.989463
 0.989463 0.003112 0.003112 0.004312
 0.004312 0.003112 0.885334 0.107241
 0.886534 0.003112 0.003112 0.107241
 0.004312 0.003112 0.885334 0.107241
 0.989463 0.003112 0.003112 0.004312
 0.934004 0.003112 0.003112 0.059771
 0.886534 0.003112 0.106041 0.004312

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sma-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sma-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.19 seconds
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