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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.3 C 0.2 G 0.2 T 0.3 

MOTIF 1-TTKCGMAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 2.4e-002
 0.014400 0.000764 0.000764 0.984072
 0.034278 0.000764 0.000764 0.964194
 0.114566 0.000764 0.369823 0.514847
 0.014400 0.885132 0.000764 0.099704
 0.099704 0.000764 0.885132 0.014400
 0.514847 0.369823 0.000764 0.114566
 0.964194 0.000764 0.000764 0.034278
 0.984072 0.000764 0.000764 0.014400

MOTIF 2-TGATGACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 2.4e-001
 0.001397 0.000930 0.000930 0.996743
 0.001397 0.000930 0.996276 0.001397
 0.834770 0.130592 0.033241 0.001397
 0.098487 0.000930 0.000930 0.899653
 0.001397 0.000930 0.996276 0.001397
 0.996743 0.000930 0.000930 0.001397
 0.001397 0.931654 0.065552 0.001397
 0.705053 0.033189 0.098020 0.163738

MOTIF 3-GATGATGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 2.4e-001
 0.006032 0.004015 0.983921 0.006032
 0.985938 0.004015 0.004015 0.006032
 0.006032 0.004015 0.004015 0.985938
 0.006032 0.004015 0.983921 0.006032
 0.985938 0.004015 0.004015 0.006032
 0.006032 0.004015 0.004015 0.985938
 0.006032 0.004015 0.704917 0.285037
 0.985938 0.004015 0.004015 0.006032

MOTIF 4-ACAAGGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.901337 0.092199 0.002583 0.003881
 0.093641 0.810279 0.092199 0.003881
 0.990952 0.002583 0.002583 0.003881
 0.990952 0.002583 0.002583 0.003881
 0.183401 0.092199 0.720519 0.003881
 0.003881 0.002583 0.989654 0.003881
 0.901337 0.002583 0.092199 0.003881
 0.273595 0.002583 0.719941 0.003881

MOTIF 5-CTACAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.027291 0.927255 0.018164 0.027291
 0.027291 0.018164 0.018164 0.936382
 0.936382 0.018164 0.018164 0.027291
 0.027291 0.927255 0.018164 0.027291
 0.936382 0.018164 0.018164 0.027291
 0.936382 0.018164 0.018164 0.027291
 0.936382 0.018164 0.018164 0.027291
 0.936382 0.018164 0.018164 0.027291

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/skn-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_skn-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.46 seconds
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