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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-CAGCGASA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.001928 0.948979 0.001375 0.047718
 0.766375 0.001375 0.230322 0.001928
 0.185233 0.047164 0.765674 0.001928
 0.001928 0.994769 0.001375 0.001928
 0.322454 0.001375 0.674243 0.001928
 0.765932 0.230765 0.001375 0.001928
 0.047718 0.505501 0.399063 0.047718
 0.949533 0.001375 0.047164 0.001928

MOTIF 2-AATTKSAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 7.9e-001
 0.798112 0.000588 0.118271 0.083029
 0.837244 0.023935 0.137995 0.000825
 0.000825 0.157562 0.000588 0.841024
 0.000825 0.126384 0.000588 0.872202
 0.059619 0.138154 0.270963 0.531264
 0.220754 0.502955 0.275466 0.000825
 0.978368 0.000588 0.020218 0.000825
 0.000825 0.000588 0.067495 0.931091

MOTIF 3-GAGGGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.104192 0.001814 0.891449 0.002545
 0.831746 0.001814 0.103461 0.062979
 0.002545 0.062248 0.932662 0.002545
 0.002545 0.122877 0.750971 0.123607
 0.002545 0.062248 0.932662 0.002545
 0.993826 0.001814 0.001814 0.002545
 0.933392 0.062248 0.001814 0.002545
 0.993826 0.001814 0.001814 0.002545

MOTIF 4-AAABCAGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.753105 0.241154 0.002389 0.003352
 0.991869 0.002389 0.002389 0.003352
 0.991869 0.002389 0.002389 0.003352
 0.003352 0.433534 0.241410 0.321705
 0.003352 0.752143 0.002389 0.242116
 0.799746 0.002389 0.161566 0.036299
 0.003352 0.002389 0.990907 0.003352
 0.003352 0.002389 0.002389 0.991869

MOTIF 5-ATGAAGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.900707 0.001418 0.001418 0.096457
 0.173963 0.238044 0.020971 0.567021
 0.001989 0.001418 0.994604 0.001989
 0.995175 0.001418 0.001418 0.001989
 0.827871 0.001418 0.168722 0.001989
 0.001989 0.182378 0.813643 0.001989
 0.754323 0.001418 0.001418 0.242841
 0.096457 0.001418 0.852902 0.049223

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sem-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sem-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.05 seconds
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