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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.249 C 0.251 G 0.251 T 0.249 

MOTIF 1-CTCGAACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.093102 0.781155 0.078443 0.047299
 0.001642 0.093112 0.047308 0.857938
 0.047299 0.903751 0.047308 0.001642
 0.001642 0.001651 0.995064 0.001642
 0.858085 0.001651 0.047308 0.092956
 0.995055 0.001651 0.001651 0.001642
 0.001642 0.949334 0.001651 0.047372
 0.229926 0.721124 0.047308 0.001642

MOTIF 2-TCCACCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 6.7e-001
 0.177331 0.002106 0.002106 0.818457
 0.118731 0.877069 0.002106 0.002094
 0.060319 0.702020 0.060330 0.177331
 0.993694 0.002106 0.002106 0.002094
 0.002094 0.935481 0.002106 0.060319
 0.002094 0.993706 0.002106 0.002094
 0.935376 0.002106 0.060424 0.002094
 0.118731 0.818845 0.002106 0.060319

MOTIF 3-AAGGCCRC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.666425 0.001667 0.001667 0.330242
 0.810547 0.186129 0.001667 0.001657
 0.001657 0.001667 0.995019 0.001657
 0.001657 0.001667 0.948940 0.047736
 0.001657 0.883639 0.001667 0.113038
 0.278574 0.718102 0.001667 0.001657
 0.533482 0.047745 0.371037 0.047736
 0.001657 0.902862 0.001667 0.093814

MOTIF 4-CCGCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.098030 0.895144 0.003422 0.003403
 0.003403 0.989771 0.003422 0.003403
 0.003403 0.003422 0.989771 0.003403
 0.003403 0.950599 0.042595 0.003403
 0.800195 0.192979 0.003422 0.003403
 0.003403 0.989771 0.003422 0.003403
 0.800499 0.003422 0.098049 0.098030
 0.192960 0.705588 0.098049 0.003403

MOTIF 5-CCGAAAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.022664 0.931882 0.022791 0.022664
 0.022664 0.931882 0.022791 0.022664
 0.022664 0.022791 0.931882 0.022664
 0.931755 0.022791 0.022791 0.022664
 0.931755 0.022791 0.022791 0.022664
 0.931755 0.022791 0.022791 0.022664
 0.022664 0.022791 0.931882 0.022664
 0.022664 0.931882 0.022791 0.022664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sem-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sem-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.52 seconds
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