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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-WATCGATW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 5.0e-001
 0.483688 0.087830 0.061733 0.366749
 0.951474 0.016165 0.031257 0.001104
 0.001104 0.001073 0.001073 0.996749
 0.001104 0.859119 0.001073 0.138704
 0.138704 0.001073 0.859119 0.001104
 0.996749 0.001073 0.001073 0.001104
 0.001104 0.031257 0.016165 0.951474
 0.366749 0.061733 0.087830 0.483688

MOTIF 2-GTMCGCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002767 0.002690 0.991776 0.002767
 0.002767 0.002690 0.002690 0.991853
 0.384080 0.610463 0.002690 0.002767
 0.078415 0.916128 0.002690 0.002767
 0.002767 0.002690 0.991776 0.002767
 0.078415 0.916128 0.002690 0.002767
 0.840555 0.078339 0.078339 0.002767
 0.991853 0.002690 0.002690 0.002767

MOTIF 3-CGCAGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 6.7e-001
 0.001330 0.959685 0.001293 0.037692
 0.037692 0.074017 0.850599 0.037692
 0.037692 0.898526 0.062452 0.001330
 0.959722 0.001293 0.001293 0.037692
 0.067486 0.147683 0.783501 0.001330
 0.923360 0.074017 0.001293 0.001330
 0.012132 0.794518 0.155658 0.037692
 0.976492 0.001293 0.020885 0.001330

MOTIF 4-GKTKACAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002414 0.068351 0.926821 0.002414
 0.002414 0.002347 0.464584 0.530655
 0.002414 0.002347 0.002347 0.992892
 0.002414 0.134354 0.530588 0.332644
 0.662662 0.068351 0.068351 0.200637
 0.002414 0.926821 0.002347 0.068417
 0.794669 0.002347 0.200570 0.002414
 0.002414 0.002347 0.002347 0.992892

MOTIF 5-CTCTGACY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002584 0.992320 0.002513 0.002584
 0.002584 0.002513 0.002513 0.992391
 0.002584 0.851016 0.143816 0.002584
 0.002584 0.285119 0.002513 0.709784
 0.073236 0.002513 0.921668 0.002584
 0.709784 0.285119 0.002513 0.002584
 0.143887 0.851016 0.002513 0.002584
 0.002584 0.567726 0.002513 0.427177

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sea-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sea-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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