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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-GATGGCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.114088 0.003057 0.878030 0.004825
 0.879799 0.003057 0.003057 0.114088
 0.114088 0.003057 0.003057 0.879799
 0.114088 0.003057 0.768767 0.114088
 0.114088 0.003057 0.878030 0.004825
 0.004825 0.878030 0.003057 0.114088
 0.114088 0.878030 0.003057 0.004825
 0.114088 0.549371 0.222453 0.114088

MOTIF 2-AGTGGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.936918 0.017627 0.017627 0.027827
 0.027827 0.017627 0.926718 0.027827
 0.027827 0.017627 0.017627 0.936918
 0.027827 0.017627 0.926718 0.027827
 0.027827 0.017627 0.926718 0.027827
 0.027827 0.926718 0.017627 0.027827
 0.027827 0.017627 0.017627 0.936918
 0.027827 0.017627 0.926718 0.027827

MOTIF 3-TAAATAVA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.127708 0.003421 0.003421 0.865449
 0.987756 0.003421 0.003421 0.005401
 0.865449 0.003421 0.003421 0.127708
 0.865449 0.125728 0.003421 0.005401
 0.005401 0.003421 0.003421 0.987756
 0.987756 0.003421 0.003421 0.005401
 0.251965 0.249985 0.492649 0.005401
 0.865449 0.003421 0.125728 0.005401

MOTIF 4-AGAAGTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.987708 0.003435 0.003435 0.005422
 0.005422 0.003435 0.985721 0.005422
 0.742137 0.126221 0.126221 0.005422
 0.864922 0.003435 0.126221 0.005422
 0.128208 0.249006 0.617363 0.005422
 0.005422 0.003435 0.003435 0.987708
 0.250994 0.617363 0.003435 0.128208
 0.005422 0.003435 0.862935 0.128208

MOTIF 5-TACAAHTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.008558 0.005421 0.005421 0.980600
 0.980600 0.005421 0.005421 0.008558
 0.008558 0.977463 0.005421 0.008558
 0.980600 0.005421 0.005421 0.008558
 0.980600 0.005421 0.005421 0.008558
 0.396139 0.396091 0.005421 0.202348
 0.202348 0.005421 0.005421 0.786809
 0.008558 0.005421 0.005421 0.980600

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sdz-38.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sdz-38/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.45 seconds
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