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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-AACCGAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 3.7e-002
 0.899800 0.000911 0.000911 0.098379
 0.831948 0.000911 0.055993 0.111148
 0.205110 0.601640 0.164681 0.028569
 0.095034 0.797727 0.106167 0.001073
 0.001073 0.000911 0.776704 0.221312
 0.903144 0.028408 0.067376 0.001073
 0.655673 0.177274 0.165980 0.001073
 0.887119 0.000911 0.110898 0.001073

MOTIF 2-CAGCTTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.050453 0.946044 0.001608 0.001894
 0.800499 0.001608 0.195999 0.001894
 0.147726 0.070269 0.780111 0.001894
 0.001894 0.585408 0.147284 0.265414
 0.001894 0.195999 0.001608 0.800499
 0.001894 0.050167 0.001608 0.946330
 0.001894 0.994603 0.001608 0.001894
 0.994889 0.001608 0.001608 0.001894

MOTIF 3-AGAAGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.790567 0.002232 0.137198 0.070003
 0.002628 0.002232 0.992512 0.002628
 0.925533 0.002232 0.069607 0.002628
 0.925533 0.002232 0.002232 0.070003
 0.137595 0.002232 0.857545 0.002628
 0.925533 0.002232 0.069607 0.002628
 0.115949 0.811816 0.002232 0.070003
 0.925533 0.002232 0.069607 0.002628

MOTIF 4-ACATTGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.900880 0.092651 0.002971 0.003498
 0.003498 0.990032 0.002971 0.003498
 0.900880 0.002971 0.002971 0.093179
 0.003498 0.002971 0.002971 0.990560
 0.003498 0.092651 0.092651 0.811199
 0.003498 0.002971 0.990032 0.003498
 0.811199 0.002971 0.092651 0.093179
 0.003498 0.630734 0.182620 0.183148

MOTIF 5-TAAATCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.004263 0.003620 0.003620 0.988497
 0.879216 0.003620 0.003620 0.113544
 0.879216 0.112901 0.003620 0.004263
 0.988497 0.003620 0.003620 0.004263
 0.004263 0.112901 0.003620 0.879216
 0.004263 0.987854 0.003620 0.004263
 0.004263 0.878573 0.003620 0.113544
 0.113544 0.003620 0.222534 0.660302

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sdz-12.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sdz-12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.14 seconds
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