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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.235 C 0.265 G 0.265 T 0.235 

MOTIF 1-CCGCYKCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.3e-001
 0.001772 0.994465 0.001991 0.001772
 0.001772 0.681140 0.210986 0.106102
 0.001772 0.001991 0.994465 0.001772
 0.001772 0.994465 0.001991 0.001772
 0.053937 0.628807 0.001991 0.315265
 0.001772 0.001991 0.419644 0.576593
 0.001772 0.994465 0.001991 0.001772
 0.001772 0.210985 0.054155 0.733087

MOTIF 2-ATGGAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.984583 0.005334 0.005334 0.004749
 0.004749 0.005334 0.005334 0.984583
 0.004749 0.005334 0.985168 0.004749
 0.004749 0.005334 0.985168 0.004749
 0.705017 0.005334 0.145117 0.144532
 0.705017 0.145117 0.145117 0.004749
 0.984583 0.005334 0.005334 0.004749
 0.004749 0.005334 0.005334 0.984583

MOTIF 3-ATTACGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.930500 0.024045 0.024045 0.021409
 0.021409 0.024045 0.024045 0.930500
 0.021409 0.024045 0.024045 0.930500
 0.930500 0.024045 0.024045 0.021409
 0.021409 0.933136 0.024045 0.021409
 0.021409 0.024045 0.933136 0.021409
 0.021409 0.933136 0.024045 0.021409
 0.930500 0.024045 0.024045 0.021409

MOTIF 4-CCCTTCGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.001957 0.993889 0.002198 0.001957
 0.059546 0.936300 0.002198 0.001957
 0.001957 0.878525 0.002198 0.117321
 0.059546 0.002198 0.002198 0.936059
 0.025797 0.002198 0.117562 0.854444
 0.001957 0.993889 0.002198 0.001957
 0.098819 0.002198 0.897027 0.001957
 0.001957 0.993889 0.002198 0.001957

MOTIF 5-CAGTGGTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002505 0.918437 0.002814 0.076244
 0.844390 0.002814 0.076552 0.076244
 0.076244 0.002814 0.844699 0.076244
 0.002505 0.076552 0.002814 0.918129
 0.076244 0.150291 0.623484 0.149982
 0.076244 0.002814 0.770723 0.150219
 0.076244 0.002814 0.002814 0.918129
 0.076244 0.887912 0.033339 0.002505

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/sdc-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_sdc-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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