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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-CCTCTWAY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.1e-002
 0.027397 0.944340 0.027227 0.001036
 0.001036 0.944340 0.000866 0.053759
 0.001036 0.000866 0.000866 0.997233
 0.053843 0.678841 0.053588 0.213727
 0.001036 0.000866 0.000866 0.997233
 0.509847 0.000866 0.027227 0.462061
 0.632857 0.233265 0.080034 0.053843
 0.091117 0.604209 0.000866 0.303808

MOTIF 2-GTCGGTAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.5e-002
 0.086603 0.000935 0.911344 0.001119
 0.029583 0.000935 0.029399 0.940084
 0.001119 0.996828 0.000935 0.001119
 0.001119 0.000935 0.768840 0.229107
 0.001119 0.000935 0.968364 0.029583
 0.001119 0.012718 0.000935 0.985229
 0.797488 0.000935 0.057863 0.143715
 0.343790 0.000935 0.654156 0.001119

MOTIF 3-GGCCACCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 3.0e-001
 0.024764 0.020691 0.929782 0.024764
 0.024764 0.020691 0.929782 0.024764
 0.024764 0.929782 0.020691 0.024764
 0.024764 0.929782 0.020691 0.024764
 0.933855 0.020691 0.020691 0.024764
 0.024764 0.929782 0.020691 0.024764
 0.024764 0.929782 0.020691 0.024764
 0.933855 0.020691 0.020691 0.024764

MOTIF 4-ATRGCTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 97 P= 3.7e-001
 0.742757 0.000552 0.177104 0.079587
 0.000661 0.000552 0.000552 0.998235
 0.495038 0.000552 0.503749 0.000661
 0.000661 0.000552 0.981307 0.017480
 0.017480 0.947669 0.017371 0.017480
 0.000661 0.000552 0.162238 0.836549
 0.024442 0.974344 0.000552 0.000661
 0.998235 0.000552 0.000552 0.000661

MOTIF 5-GAAGAACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.003498 0.091926 0.901079 0.003498
 0.990657 0.002922 0.002922 0.003498
 0.990657 0.002922 0.002922 0.003498
 0.003498 0.002922 0.990082 0.003498
 0.990657 0.002922 0.002922 0.003498
 0.723648 0.269932 0.002922 0.003498
 0.003498 0.990082 0.002922 0.003498
 0.003498 0.002922 0.901079 0.092501

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/rpc-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_rpc-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.44 seconds
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