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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-AKAGATGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.991961 0.002563 0.002563 0.002913
 0.154998 0.002563 0.459557 0.382882
 0.764077 0.002563 0.078483 0.154876
 0.002913 0.002563 0.991610 0.002913
 0.916040 0.002563 0.002563 0.078834
 0.002913 0.078483 0.002563 0.916040
 0.002913 0.002563 0.991610 0.002913
 0.991961 0.002563 0.002563 0.002913

MOTIF 2-AGATAGCK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.664062 0.046162 0.198611 0.091166
 0.046368 0.001507 0.905756 0.046368
 0.771928 0.046162 0.046162 0.135749
 0.001714 0.046162 0.001507 0.950617
 0.905891 0.001507 0.090888 0.001714
 0.001714 0.001507 0.995065 0.001714
 0.135677 0.716337 0.083133 0.064853
 0.001714 0.180125 0.288063 0.530098

MOTIF 3-AAGWGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988723 0.003595 0.003595 0.004087
 0.988723 0.003595 0.003595 0.004087
 0.004087 0.003595 0.988231 0.004087
 0.540008 0.003595 0.110090 0.346307
 0.004087 0.003595 0.988231 0.004087
 0.988723 0.003595 0.003595 0.004087
 0.988723 0.003595 0.003595 0.004087
 0.988723 0.003595 0.003595 0.004087

MOTIF 4-ACCAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.985198 0.004719 0.004719 0.005364
 0.005364 0.984552 0.004719 0.005364
 0.005364 0.844769 0.004719 0.145148
 0.705181 0.004719 0.004719 0.285381
 0.005364 0.004719 0.984552 0.005364
 0.985198 0.004719 0.004719 0.005364
 0.005364 0.004719 0.984552 0.005364
 0.705181 0.004719 0.284736 0.005364

MOTIF 5-CGGCAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003156 0.826179 0.002776 0.167889
 0.167889 0.002776 0.826179 0.003156
 0.085390 0.002776 0.908678 0.003156
 0.003156 0.990912 0.002776 0.003156
 0.991292 0.002776 0.002776 0.003156
 0.909058 0.002776 0.085010 0.003156
 0.991292 0.002776 0.002776 0.003156
 0.579325 0.085010 0.085010 0.250654

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/rnt-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_rnt-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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