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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.287 C 0.213 G 0.213 T 0.287 

MOTIF 1-AAATTGTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.877577 0.001786 0.060005 0.060633
 0.935796 0.060005 0.001786 0.002414
 0.818982 0.001786 0.060005 0.119227
 0.060633 0.001786 0.001786 0.935796
 0.002414 0.001786 0.001786 0.994015
 0.002414 0.001786 0.993386 0.002414
 0.119039 0.060005 0.001786 0.819171
 0.060633 0.701163 0.001786 0.236418

MOTIF 2-ATTTTCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.992207 0.002325 0.002325 0.003143
 0.003143 0.078124 0.154167 0.764566
 0.003143 0.230455 0.154167 0.612235
 0.003143 0.002325 0.002325 0.992207
 0.003143 0.002325 0.002325 0.992207
 0.003143 0.991389 0.002325 0.003143
 0.003143 0.991389 0.002325 0.003143
 0.992207 0.002325 0.002325 0.003143

MOTIF 3-AAATATTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991952 0.002401 0.002401 0.003246
 0.757118 0.080679 0.080679 0.081524
 0.991952 0.002401 0.002401 0.003246
 0.003246 0.002401 0.080679 0.913674
 0.756866 0.159209 0.080679 0.003246
 0.003246 0.002401 0.080679 0.913674
 0.003246 0.080679 0.002401 0.913674
 0.035650 0.002401 0.958703 0.003246

MOTIF 4-GAMATKTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.004074 0.003014 0.988837 0.004074
 0.940766 0.003014 0.003014 0.053206
 0.300458 0.594190 0.003014 0.102338
 0.842502 0.003014 0.150410 0.004074
 0.004074 0.150410 0.003014 0.842502
 0.102338 0.003014 0.594190 0.300458
 0.053206 0.003014 0.003014 0.940766
 0.004074 0.988837 0.003014 0.004074

MOTIF 5-AAACCWAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.864913 0.003757 0.003757 0.127573
 0.987407 0.003757 0.003757 0.005079
 0.987407 0.003757 0.003757 0.005079
 0.005079 0.986085 0.003757 0.005079
 0.005079 0.741097 0.003757 0.250067
 0.619924 0.003757 0.003757 0.372561
 0.987407 0.003757 0.003757 0.005079
 0.987407 0.003757 0.003757 0.005079

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/repo-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_repo-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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