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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-CAACAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.002733 0.916350 0.002711 0.078206
 0.916372 0.002711 0.002711 0.078206
 0.916372 0.002711 0.002711 0.078206
 0.002733 0.991823 0.002711 0.002733
 0.916372 0.002711 0.002711 0.078206
 0.916372 0.078184 0.002711 0.002733
 0.758188 0.129652 0.033954 0.078206
 0.840900 0.078184 0.002711 0.078206

MOTIF 2-ACGACGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.931909 0.022636 0.022636 0.022818
 0.022818 0.931727 0.022636 0.022818
 0.022818 0.022636 0.931727 0.022818
 0.931909 0.022636 0.022636 0.022818
 0.022818 0.931727 0.022636 0.022818
 0.022818 0.022636 0.931727 0.022818
 0.022818 0.931727 0.022636 0.022818
 0.022818 0.931727 0.022636 0.022818

MOTIF 3-GGAAGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.8e-001
 0.001920 0.001905 0.888049 0.108126
 0.091093 0.012045 0.841924 0.054938
 0.888064 0.108111 0.001905 0.001920
 0.781686 0.054923 0.161471 0.001920
 0.054938 0.001905 0.941238 0.001920
 0.866287 0.023852 0.054923 0.054938
 0.023868 0.001905 0.919290 0.054938
 0.888235 0.054923 0.054923 0.001920

MOTIF 4-GGHASCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.182110 0.001621 0.814636 0.001634
 0.091872 0.001621 0.724398 0.182110
 0.363022 0.272771 0.046740 0.317467
 0.904887 0.091859 0.001621 0.001634
 0.001634 0.363009 0.633723 0.001634
 0.001634 0.995112 0.001621 0.001634
 0.001634 0.859755 0.001621 0.136991
 0.001634 0.949993 0.001621 0.046753

MOTIF 5-ATAATATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.845042 0.005024 0.144870 0.005064
 0.005064 0.005024 0.005024 0.984888
 0.984888 0.005024 0.005024 0.005064
 0.845042 0.005024 0.144870 0.005064
 0.005064 0.144870 0.005024 0.845042
 0.984888 0.005024 0.005024 0.005064
 0.005064 0.005024 0.005024 0.984888
 0.005064 0.285166 0.704706 0.005064

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ref-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ref-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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