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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CTCGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 2.4e-001
 0.038638 0.847055 0.112839 0.001469
 0.069093 0.075670 0.001212 0.854025
 0.138322 0.821828 0.001212 0.038638
 0.001469 0.001212 0.883984 0.113335
 0.001469 0.001212 0.921512 0.075806
 0.113335 0.846815 0.001212 0.038638
 0.001469 0.958681 0.001212 0.038638
 0.846710 0.001212 0.150608 0.001469

MOTIF 2-ATCGAACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 3.0e-001
 0.637663 0.118179 0.001188 0.242970
 0.001439 0.001188 0.001188 0.996186
 0.001439 0.776674 0.074117 0.147770
 0.001439 0.001188 0.995935 0.001439
 0.996186 0.001188 0.001188 0.001439
 0.996186 0.001188 0.001188 0.001439
 0.074368 0.923005 0.001188 0.001439
 0.001439 0.959529 0.037594 0.001439

MOTIF 3-GYCGTGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 8.8e-001
 0.078833 0.002474 0.915697 0.002997
 0.002997 0.459946 0.002474 0.534583
 0.002997 0.915697 0.078310 0.002997
 0.002997 0.002474 0.915697 0.078833
 0.002997 0.078310 0.002474 0.916220
 0.002997 0.002474 0.991533 0.002997
 0.002997 0.002474 0.002474 0.992056
 0.916220 0.002474 0.002474 0.078833

MOTIF 4-CAATCTGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002791 0.921496 0.002304 0.073410
 0.851363 0.072923 0.072923 0.002791
 0.992602 0.002304 0.002304 0.002791
 0.144257 0.002304 0.002304 0.851136
 0.073410 0.850876 0.072923 0.002791
 0.002791 0.002304 0.002304 0.992602
 0.002791 0.002304 0.779573 0.215332
 0.073410 0.850876 0.002304 0.073410

MOTIF 5-ACAAAAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.990622 0.002920 0.002920 0.003538
 0.003538 0.990005 0.002920 0.003538
 0.721760 0.092445 0.182258 0.003538
 0.901097 0.092445 0.002920 0.003538
 0.990622 0.002920 0.002920 0.003538
 0.901097 0.092445 0.002920 0.003538
 0.811284 0.182258 0.002920 0.003538
 0.003538 0.002920 0.990005 0.003538

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/rec-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_rec-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.20 seconds
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