********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.262 C 0.238 G 0.238 T 0.262 

MOTIF 1-AGACGSAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.994450 0.001791 0.001791 0.001968
 0.054084 0.001791 0.890041 0.054084
 0.942334 0.053907 0.001791 0.001968
 0.054168 0.785558 0.001791 0.158483
 0.054084 0.001791 0.942157 0.001968
 0.001968 0.627607 0.368456 0.001968
 0.994450 0.001791 0.001791 0.001968
 0.001968 0.001791 0.942157 0.054084

MOTIF 2-GGGAAAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 8.8e-001
 0.258267 0.054313 0.685436 0.001983
 0.001983 0.001804 0.941720 0.054492
 0.001983 0.001804 0.941720 0.054492
 0.994408 0.001804 0.001804 0.001983
 0.836712 0.001804 0.106991 0.054492
 0.836712 0.001804 0.106991 0.054492
 0.994408 0.001804 0.001804 0.001983
 0.160018 0.001804 0.783685 0.054492

MOTIF 3-AACAGGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.721119 0.182731 0.092762 0.003387
 0.990449 0.003082 0.003082 0.003387
 0.003387 0.720814 0.182731 0.093068
 0.900769 0.003082 0.092762 0.003387
 0.003387 0.003082 0.900463 0.093068
 0.003387 0.003082 0.990144 0.003387
 0.003387 0.092762 0.900463 0.003387
 0.093068 0.003082 0.900463 0.003387

MOTIF 4-AACACCAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.990796 0.002970 0.002970 0.003264
 0.782176 0.089392 0.038746 0.089686
 0.003264 0.990502 0.002970 0.003264
 0.990796 0.002970 0.002970 0.003264
 0.089686 0.730958 0.176092 0.003264
 0.089686 0.904080 0.002970 0.003264
 0.990796 0.002970 0.002970 0.003264
 0.089686 0.176371 0.002970 0.730973

MOTIF 5-AATCGATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 1.0e+000
 0.678469 0.239422 0.054373 0.027737
 0.724221 0.073268 0.000918 0.201592
 0.167077 0.014282 0.000918 0.817723
 0.214913 0.646248 0.000918 0.137921
 0.137921 0.000918 0.646248 0.214913
 0.817723 0.000918 0.014282 0.167077
 0.201592 0.000918 0.073268 0.724221
 0.027737 0.054373 0.239422 0.678469

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/rbr-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_rbr-2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.10 seconds
********************************************************************************