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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-TGATAASA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 107 P= 1.4e-001
 0.000671 0.030511 0.000413 0.968405
 0.000671 0.000413 0.998246 0.000671
 0.998503 0.000413 0.000413 0.000671
 0.000671 0.000413 0.000413 0.998503
 0.983478 0.000413 0.015438 0.000671
 0.938968 0.006633 0.045633 0.008766
 0.070294 0.553037 0.313142 0.063527
 0.765404 0.073746 0.099567 0.061283

MOTIF 2-CTCCGAAW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.5e-001
 0.002069 0.855363 0.047633 0.094935
 0.048428 0.001275 0.047633 0.902665
 0.141144 0.809154 0.001275 0.048428
 0.048428 0.762795 0.186708 0.002069
 0.160335 0.047633 0.789963 0.002069
 0.995381 0.001275 0.001275 0.002069
 0.809948 0.047633 0.140350 0.002069
 0.624515 0.001275 0.001275 0.372935

MOTIF 3-GTACAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004395 0.002707 0.890051 0.102848
 0.004395 0.002707 0.002707 0.990191
 0.990191 0.002707 0.002707 0.004395
 0.004395 0.791281 0.002707 0.201617
 0.990191 0.002707 0.002707 0.004395
 0.792968 0.199930 0.002707 0.004395
 0.694515 0.101160 0.002707 0.201617
 0.990191 0.002707 0.002707 0.004395

MOTIF 4-ACTTSCTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.631689 0.092093 0.002465 0.273753
 0.004001 0.989534 0.002465 0.004001
 0.093629 0.002465 0.002465 0.901442
 0.004001 0.002465 0.002465 0.991070
 0.004001 0.451474 0.540524 0.004001
 0.004001 0.989534 0.002465 0.004001
 0.004001 0.002465 0.002465 0.991070
 0.722184 0.002465 0.092093 0.183258

MOTIF 5-AGAGAAAM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.993443 0.001810 0.001810 0.002937
 0.002937 0.001810 0.992316 0.002937
 0.993443 0.001810 0.001810 0.002937
 0.002937 0.001810 0.992316 0.002937
 0.795811 0.001810 0.199442 0.002937
 0.927636 0.001810 0.067617 0.002937
 0.729579 0.001810 0.265674 0.002937
 0.663132 0.332121 0.001810 0.002937

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/pqm-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_pqm-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n06.farnam.hpc.yale.internal
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FINALTIME:	1.33 seconds
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