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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-GGCAGAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003417 0.003534 0.989631 0.003417
 0.003417 0.003534 0.989631 0.003417
 0.003417 0.679961 0.003534 0.313088
 0.893149 0.003534 0.099900 0.003417
 0.003417 0.099900 0.893266 0.003417
 0.989515 0.003534 0.003534 0.003417
 0.003417 0.099900 0.893266 0.003417
 0.003417 0.989631 0.003534 0.003417

MOTIF 2-AGTGGTTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.995117 0.001646 0.001646 0.001591
 0.001591 0.001646 0.905279 0.091484
 0.001591 0.001646 0.001646 0.995117
 0.091340 0.001646 0.905423 0.001591
 0.001591 0.001646 0.995172 0.001591
 0.001591 0.091539 0.001646 0.905224
 0.271416 0.001646 0.001646 0.725293
 0.770167 0.001646 0.226596 0.001591

MOTIF 3-CGAACCCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.001671 0.805579 0.001728 0.191023
 0.001671 0.048837 0.947821 0.001671
 0.994874 0.001728 0.001728 0.001671
 0.947764 0.001728 0.001728 0.048780
 0.001671 0.994931 0.001728 0.001671
 0.048780 0.900712 0.048837 0.001671
 0.115951 0.786280 0.001728 0.096042
 0.048780 0.048837 0.900712 0.001671

MOTIF 4-GCCGCACR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.078361 0.154373 0.764582 0.002684
 0.002684 0.991857 0.002775 0.002684
 0.002684 0.991857 0.002775 0.002684
 0.002684 0.002775 0.991857 0.002684
 0.002684 0.991857 0.002775 0.002684
 0.916088 0.078453 0.002775 0.002684
 0.002684 0.991857 0.002775 0.002684
 0.610929 0.002775 0.383612 0.002684

MOTIF 5-CTGAGCTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002830 0.991413 0.002927 0.002830
 0.002830 0.002927 0.002927 0.991316
 0.002830 0.002927 0.991413 0.002830
 0.751124 0.243119 0.002927 0.002830
 0.002830 0.002927 0.991413 0.002830
 0.002830 0.991413 0.002927 0.002830
 0.002830 0.002927 0.002927 0.991316
 0.991316 0.002927 0.002927 0.002830

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/pop-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_pop-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.97 seconds
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