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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-GGCAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.7e-001
 0.128663 0.001587 0.825881 0.043869
 0.086266 0.043985 0.783483 0.086266
 0.001471 0.910676 0.043985 0.043869
 0.868162 0.001587 0.086382 0.043869
 0.655316 0.086382 0.256830 0.001471
 0.680689 0.043985 0.129209 0.146118
 0.001471 0.766029 0.103836 0.128663
 0.825335 0.001587 0.171606 0.001471

MOTIF 2-CGGAGGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 7.7e-001
 0.021864 0.932682 0.023591 0.021864
 0.021864 0.023591 0.932682 0.021864
 0.021864 0.023591 0.932682 0.021864
 0.930955 0.023591 0.023591 0.021864
 0.021864 0.023591 0.932682 0.021864
 0.021864 0.023591 0.932682 0.021864
 0.930955 0.023591 0.023591 0.021864
 0.930955 0.023591 0.023591 0.021864

MOTIF 3-ACACTCTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.786816 0.139681 0.071124 0.002379
 0.002379 0.992676 0.002567 0.002379
 0.786122 0.071124 0.002567 0.140188
 0.030602 0.827338 0.139681 0.002379
 0.002379 0.139681 0.002567 0.855373
 0.139493 0.649195 0.140376 0.070936
 0.002379 0.002567 0.002567 0.992488
 0.002379 0.140376 0.002567 0.854679

MOTIF 4-AAGCGATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.932299 0.002284 0.063299 0.002117
 0.688240 0.063299 0.002284 0.246177
 0.088250 0.063299 0.785318 0.063132
 0.088250 0.846333 0.002284 0.063132
 0.124147 0.149433 0.663288 0.063132
 0.748637 0.124314 0.124932 0.002117
 0.088250 0.002284 0.063299 0.846166
 0.063132 0.088418 0.846333 0.002117

MOTIF 5-ATCATATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.930955 0.023591 0.023591 0.021864
 0.021864 0.023591 0.023591 0.930955
 0.021864 0.932682 0.023591 0.021864
 0.930955 0.023591 0.023591 0.021864
 0.021864 0.023591 0.023591 0.930955
 0.930955 0.023591 0.023591 0.021864
 0.021864 0.023591 0.023591 0.930955
 0.021864 0.023591 0.023591 0.930955

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/peb-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_peb-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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