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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.314 C 0.186 G 0.186 T 0.314 

MOTIF 1-GGATTAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 2.4e-001
 0.004918 0.002921 0.987244 0.004918
 0.004918 0.002921 0.987244 0.004918
 0.989241 0.002921 0.002921 0.004918
 0.004918 0.002921 0.002921 0.989241
 0.004918 0.002921 0.002921 0.989241
 0.989241 0.002921 0.002921 0.004918
 0.989241 0.002921 0.002921 0.004918
 0.662196 0.002921 0.329965 0.004918

MOTIF 2-ACTAATCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.937609 0.016936 0.016936 0.028518
 0.028518 0.926027 0.016936 0.028518
 0.028518 0.016936 0.016936 0.937609
 0.937609 0.016936 0.016936 0.028518
 0.937609 0.016936 0.016936 0.028518
 0.028518 0.016936 0.016936 0.937609
 0.028518 0.926027 0.016936 0.028518
 0.028518 0.016936 0.016936 0.937609

MOTIF 3-ATGACGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 7.6e-001
 0.951518 0.002540 0.002540 0.043402
 0.004277 0.002540 0.002540 0.990642
 0.004277 0.286987 0.609948 0.098788
 0.990642 0.002540 0.002540 0.004277
 0.004277 0.988905 0.002540 0.004277
 0.004277 0.002540 0.988905 0.004277
 0.990642 0.002540 0.002540 0.004277
 0.288724 0.002540 0.609948 0.098788

MOTIF 4-GATAATCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002686 0.120489 0.874139 0.002686
 0.696984 0.120489 0.120489 0.062038
 0.002686 0.001595 0.001595 0.994123
 0.994123 0.001595 0.001595 0.002686
 0.934772 0.060947 0.001595 0.002686
 0.002686 0.001595 0.001595 0.994123
 0.062038 0.874329 0.060947 0.002686
 0.121580 0.180224 0.001595 0.696601

MOTIF 5-CTCACTTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.059368 0.902160 0.012390 0.026083
 0.026083 0.058324 0.001527 0.914067
 0.002570 0.936535 0.058324 0.002570
 0.994376 0.001527 0.001527 0.002570
 0.116531 0.537305 0.115304 0.230861
 0.002570 0.058324 0.058324 0.880782
 0.002570 0.025039 0.001527 0.970864
 0.002570 0.058324 0.058324 0.880782

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/pax-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_pax-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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