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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-AAAAATCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.859132 0.003170 0.049226 0.088471
 0.990664 0.003170 0.003170 0.002995
 0.905188 0.003170 0.003170 0.088471
 0.990664 0.003170 0.003170 0.002995
 0.905188 0.003170 0.003170 0.088471
 0.002995 0.174397 0.003170 0.819437
 0.174222 0.819612 0.003170 0.002995
 0.088471 0.003170 0.905363 0.002995

MOTIF 2-AGTGGAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 9.1e-001
 0.889705 0.000747 0.080380 0.029168
 0.109784 0.061168 0.727498 0.101549
 0.126509 0.041006 0.061168 0.771316
 0.101354 0.069534 0.754225 0.074887
 0.029168 0.049339 0.799781 0.121711
 0.767684 0.101460 0.020909 0.109947
 0.873108 0.044921 0.041006 0.040965
 0.101484 0.101590 0.695475 0.101451

MOTIF 3-AGTGCGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989677 0.003506 0.003506 0.003312
 0.003312 0.098016 0.895360 0.003312
 0.003312 0.003506 0.003506 0.989677
 0.003312 0.042630 0.856236 0.097822
 0.003312 0.800546 0.192830 0.003312
 0.003312 0.098016 0.800850 0.097822
 0.003312 0.989871 0.003506 0.003312
 0.003312 0.003506 0.989871 0.003312

MOTIF 4-GTGCGGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003819 0.004042 0.988321 0.003819
 0.003819 0.004042 0.004042 0.988097
 0.003819 0.004042 0.988321 0.003819
 0.003819 0.988321 0.004042 0.003819
 0.112791 0.004042 0.879348 0.003819
 0.003819 0.004042 0.879348 0.112791
 0.003819 0.879348 0.004042 0.112791
 0.879125 0.004042 0.004042 0.112791

MOTIF 5-AGGGATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.931173 0.023373 0.023373 0.022082
 0.022082 0.023373 0.932464 0.022082
 0.022082 0.023373 0.932464 0.022082
 0.022082 0.023373 0.932464 0.022082
 0.931173 0.023373 0.023373 0.022082
 0.022082 0.023373 0.023373 0.931173
 0.931173 0.023373 0.023373 0.022082
 0.931173 0.023373 0.023373 0.022082

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/pat-9.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_pat-9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.16 seconds
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