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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.245 C 0.255 G 0.255 T 0.245 

MOTIF 1-GCGCTCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.063967 0.064051 0.869796 0.002186
 0.002186 0.931576 0.002270 0.063967
 0.002186 0.126030 0.869597 0.002186
 0.002186 0.993357 0.002270 0.002186
 0.002186 0.126030 0.002270 0.869513
 0.002186 0.993357 0.002270 0.002186
 0.063967 0.807816 0.002270 0.125946
 0.931493 0.064051 0.002270 0.002186

MOTIF 2-GCTAACCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.002691 0.078836 0.839741 0.078733
 0.078733 0.763699 0.002794 0.154774
 0.002691 0.002794 0.002794 0.991721
 0.839393 0.002794 0.155122 0.002691
 0.915679 0.002794 0.078836 0.002691
 0.078733 0.915782 0.002794 0.002691
 0.002691 0.915782 0.078836 0.002691
 0.839637 0.002794 0.154877 0.002691

MOTIF 3-CAGTTGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.022300 0.932245 0.023155 0.022300
 0.931391 0.023155 0.023155 0.022300
 0.022300 0.023155 0.932245 0.022300
 0.022300 0.023155 0.023155 0.931391
 0.022300 0.023155 0.023155 0.931391
 0.022300 0.023155 0.932245 0.022300
 0.022300 0.023155 0.932245 0.022300
 0.022300 0.023155 0.932245 0.022300

MOTIF 4-GCCAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.086043 0.043758 0.826500 0.043700
 0.072483 0.755510 0.086100 0.085907
 0.001494 0.977990 0.019023 0.001494
 0.893519 0.001551 0.085964 0.018966
 0.001494 0.043758 0.953255 0.001494
 0.615409 0.170513 0.043758 0.170320
 0.001494 0.043758 0.911049 0.043700
 0.893519 0.019023 0.001551 0.085907

MOTIF 5-AGAAAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.988135 0.004004 0.004004 0.003856
 0.003856 0.004004 0.879311 0.112829
 0.770191 0.112976 0.004004 0.112829
 0.988135 0.004004 0.004004 0.003856
 0.988135 0.004004 0.004004 0.003856
 0.879163 0.004004 0.112976 0.003856
 0.988135 0.004004 0.004004 0.003856
 0.003856 0.004004 0.004004 0.988135

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/pag-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_pag-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.13 seconds
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