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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-GAATCGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.060356 0.001944 0.935452 0.002248
 0.993864 0.001944 0.001944 0.002248
 0.702946 0.118349 0.060053 0.118652
 0.002248 0.060053 0.001944 0.935755
 0.002248 0.818672 0.001944 0.177136
 0.002248 0.001944 0.935452 0.060356
 0.993864 0.001944 0.001944 0.002248
 0.993864 0.001944 0.001944 0.002248

MOTIF 2-ATAGSTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.727210 0.122735 0.147721 0.002335
 0.062692 0.002019 0.243644 0.691644
 0.993627 0.002019 0.002019 0.002335
 0.002335 0.304002 0.691329 0.002335
 0.002335 0.449898 0.545433 0.002335
 0.062692 0.002019 0.002019 0.933269
 0.002335 0.932954 0.002019 0.062692
 0.243960 0.630971 0.062377 0.062692

MOTIF 3-YTTGCAAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 3.0e-001
 0.203954 0.316046 0.001015 0.478985
 0.087390 0.001015 0.001015 0.910579
 0.001174 0.061857 0.001015 0.935954
 0.122613 0.087232 0.788982 0.001174
 0.001174 0.788982 0.087232 0.122613
 0.935954 0.001015 0.061857 0.001174
 0.910579 0.001015 0.001015 0.087390
 0.478985 0.001015 0.316046 0.203954

MOTIF 4-CCGCACGS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001732 0.995038 0.001498 0.001732
 0.020267 0.886953 0.091048 0.001732
 0.001732 0.136256 0.860281 0.001732
 0.136201 0.860570 0.001498 0.001732
 0.860803 0.001498 0.001498 0.136201
 0.046507 0.927876 0.023885 0.001732
 0.001732 0.001498 0.995038 0.001732
 0.181120 0.470241 0.271598 0.077041

MOTIF 5-AGCTCACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.927035 0.002208 0.068205 0.002553
 0.002553 0.002208 0.860694 0.134546
 0.134546 0.860694 0.002208 0.002553
 0.134758 0.002208 0.134413 0.728621
 0.200542 0.596708 0.200198 0.002553
 0.861038 0.068205 0.002208 0.068549
 0.002553 0.860587 0.068311 0.068549
 0.860932 0.068205 0.002208 0.068655

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/odd-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_odd-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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